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...ttgttttcagaatttttagatgctgataaacttatttgttgatggtatcactgttgaaaaaaaagaaaagggaaaaattcttattcgttgctattttcagGTCCTGATGTAAGTGATGGAAGCAATCATCCTGATGCAATACAGAGGCTGATAGAAATGGAGCTGAGGGCAAATTCAAAGCAGATCCATCCATTAGCTGC
species | Vitis vinifera |
transcript | Vv15s0046g02270.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTTGGTCATCGACAACCTAACTTTGGTGGTCTTGGAATGCCAGTGCCAG GTCCTGATGTAAGTGATGGAAGCAATCATCCTGATGCAATACAGAGGCTGAEST: gi|110412497|gb|EC978247.1|EC978247
genomic: TTTTGGTCATCGACAACCTAACTTTGGTGGTCTTGGAATGCCAGTGCCAGgtaaagcatt ... ctattttcagGTCCTGATGTAAGTGATGGAAGCAATCATCCTGATGCAATACAGAGGCTGA
EST: TTTTGGTCATCGACAACCTAACTTTGGTGGTCTTGGAATGCCAGTGCCAG GTCCTGATGTAAGTGATGGAAGCAATCATCCTGATGCAATACAGAGGCTGAEST: gi|34364202|gb|CF405787.1|CF405787
genomic: TTTTGGTCATCGACAACCTAACTTTGGTGGTCTTGGAATGCCAGTGCCAGgtaaagcatt ... ctattttcagGTCCTGATGTAAGTGATGGAAGCAATCATCCTGATGCAATACAGAGGCTGA
EST: TTTTGGTCATCGACAACCTAACTTTGGTGGTCTTGGAATGCCAGTGCCAG GTCCTGATGTAAGTGATGGAAGCAATCATCCTGATGCAATACAGAGGCTGAEST: gi|34361539|gb|CF403124.1|CF403124
genomic: TTTTGGTCATCGACAACCTAACTTTGGTGGTCTTGGAATGCCAGTGCCAGgtaaagcatt ... ctattttcagGTCCTGATGTAAGTGATGGAAGCAATCATCCTGATGCAATACAGAGGCTGA
EST: TTTTGGTCATCGACAACCTAACTTTGGTGGTCTTGGAATGCCAGTGCCAG GTCCTGATGTAAGTGATGGAAGCAATCATCCTGATGCAATACAGAGGCTGA
genomic: TTTTGGTCATCGACAACCTAACTTTGGTGGTCTTGGAATGCCAGTGCCAGgtaaagcatt ... ctattttcagGTCCTGATGTAAGTGATGGAAGCAATCATCCTGATGCAATACAGAGGCTGA
tatcactgttgaaaaaaaagaaaagggaaaaattcttattcgttgctattttcagGTCCTGATGTAAGTGATGGAAGCAATCATCCTGATGCAATACAGAGGCTGATAGAAATGGAGCTGAGGGCAAATTCAAAGCAGATCCATCCATTAGCTGC
ctattttc CT-rich tract
ttgaaaaaaaagaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgttttcagaatttttagatgctgataaacttatttgttgatggtatcactgttgaaaaaaaagaaaagggaaaaattcttattcgttgctattttcagGTCCTGATGTAAGTGATGGAAGCAATCATCCTGATGCAATACAGAGGCTGATAGAAATGGAGCTGAGGGCAAATTCAAAGCAGATCCATCCATTAGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - gataaac
- - - - - - - - - - - - - - - - - - - -tgatggt
- - - - - - - - - - - - - - - - - - - - - - - - - ctgttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ggaaaaa