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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaagcaagggtaacacatttttcatgtgacttaattcaccaataataaactctgagtttgtaaatttggatacccttttgcttgtaatgttcttgaatcctgttataatctcgacctgccagGCTCGTAGTGCATATCATGGCATCGGGCTTGTAAAACTGATGGGAAGAAGCAGCGGCTTTATAGCAATGCACGCTTCGCTTTCAAGCGGTCAGATTGATA

Basic information

species Vitis vinifera
transcript Vv14s0108g00540.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0108g00540.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os08g34050.1 (Oryza sativa), 3'ss of exon 8
gtaagcaagcaagggtaacacatttttcatgtgacttaattcaccaataataaactctgagtttgtaaatttggatacccttttgcttgtaatgttcttgaatcctgttataatctcgacctgccagGCTCGTAGTGCATATCATGGCATCGGGCTTGTAAAACTGATGGGAAGAAGCAGCGGCTTTATAGCAATGCACGCTTCGCTTTCAAGCGGTCAGATTGATA
                              || | |||| | ||  ||| |||  | || |||      ||   ||    | | |     || ||||  |         || |   | |      |||| || || ||||| |||||||| ||  | || ||| | |||||||||||||| ||||| || |||||||| ||||| |||||||| || ||| ||||| 
------------------------------gtaagttaaattactgatattaa-ttgtgtgttaagcttttcaaatcagttgtagagatgaaagttcaagggaataa--atcactactata-attagGCACGAAGCGCATACCATGGCATTGGTTTGGTCAAATTAATGGGAAGAAGCAGTGGCTTCATTGCAATGCATGCTTCCCTTTCAAGTGGGCAGGTTGATG

upper sequence: Vv14s0108g00540.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os10g26570.1 (Oryza sativa), 3'ss of exon 9
gtaagcaagcaagggtaacacatttttcatgtgacttaattcaccaataa--taaactctgagtttgtaaatttggatacccttttgcttgtaatgtt--cttgaatcctgttataatctcg-acctgccagGCTCGTAGTGCATATCATGGCATCGGGCTTGTAAAACTGATGGGAAGAAGCAGCGGCTTTATAGCAATGCACGCTTCGCTTTCAAGCGGTCAGATTGATA
|| |   |       | |  ||||    |||  ||||   | ||  |  |  || |     | | || | ||     |  ||  || |    ||   |   |||    | || | ||| |      |   |||| | |  ||||| ||||||||| ||  | || || ||||||||||||||||| ||||||||  ||||||| ||||| || || || || ||  | ||||
gtgattcatttca--tgagccattcagaatg-aacttgtctgactgaagaactatatatataatatgcacatcatagttaccagttaccaccaaaactagtttggtagcagtaacaattttttgtgtattagGCACATTCTGCATTTCATGGCATTGGATTGGTCAAGCTGATGGGAAGAAGCAGTGGCTTTATCACAATGCATGCTTCCCTGTCTAGTGGCCAAGTAGATA

upper sequence: Vv14s0108g00540.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G139360_T01 (Zea mays), 3'ss of exon 8
gtaagcaagcaagggtaacacatttttcatgtgacttaattcaccaataataaactctgagtttgtaaa---tttggatacccttttgcttgta-atgttcttgaatcctgttataatctcgacctgcc-agGCTCGTAGTGCATATCATGGCATCGGGCTTGTAAAACTGATGGGAAGAAGCAGCGGCTTTATAGCAATGCACGCTTCGCTTTCAAGCGGTCAGATTGATA
        | | |   | || | ||   |||     |  |       | | |   | |     |  |||   ||     |   |  ||| || | ||| ||||   |    |||| ||  |   ||    |||| |||||||| || ||||| || ||  | || ||| | ||||||||||||||||| ||||| |||||||||||||| |||||||| || ||| | ||| 
--------gtaggctgatcatacttgctatgcaggctgttctgtagttgacattgtttagagatacaaaggtttacagaaagatgctgcatggagatgatctttgttttatttatgatgacactctttttagGCACGTAGTGCTTACCATGGTATTGGCTTGGTCAAATTAATGGGAAGAAGCAGCGGGTTTATTGCAATGCACGCTTCCCTTTCAAGTGGGCAGGTCGATG

upper sequence: Vv14s0108g00540.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G009591_T01 (Zea mays), 3'ss of exon 8
gtaagcaagcaagggtaacacatttttcatgtgacttaattcaccaataataaactctg-agtttgtaaatttggatacccttttgcttgtaatgttcttgaatcctgttataatctcgacctgccagGCTCGTAGTGCATATCATGGCATCGGGCTTGTAAAACTGATGGGAAGAAGCAGCGGCTTTATAGCAATGCACGCTTCGCTTTCAAGCGGTCAGATTGATA
                        ||| |   |    ||      | | | |  || |   |  || |        ||  | | |||    | ||    |   |    || ||   | ||| |   |||| | |  ||||| ||||||||| || || || || ||||||||||||||||||||||| ||  ||||||| || || || ||||| || ||  | ||||
------------------------tttgaccagcgagaacctcatagtgacattctttttgggatggatggactattaaacatatgcacagagtgcctgttgttaacatttta--ttggactt--tagGCACATTCTGCATTTCATGGCATTGGACTGGTCAAGCTGATGGGAAGAAGCAGCGGCTTCATCACAATGCATGCCTCCCTGTCAAGTGGCCAAGTAGATA

upper sequence: Vv14s0108g00540.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G127717_T02 (Zea mays), 3'ss of exon 9
gtaagcaagcaagggtaacacatttttcatgtgacttaattcaccaataataaactctgagtttgtaaatttggatacccttt-tgcttgtaatgttcttgaatcctgttataatctcgacctgccagGCTCGTAGTGCATATCATGGCATCGGGCTTGTAAAACTGATGGGAAGAAGCAGCGGCTTTATAGCAATGCACGCTTCGCTTTCAAGCGGTCAGATTGATA
    | | ||   | |  | || | ||  ||    | ||   | | ||| | || |  ||  ||| || |||  ||||  | | ||||||   | | ||||| | ||   ||| |       |   |||| ||||||||||| || || || ||| | |||||| | ||||||||||| || || || ||||| ||||| ||||| ||||| || || ||||||||| 
----gtaggctttgttt-ctcaatgttagtgcatttcaa---aacgatagtcaaat--gaagttg-aactttacatacagtctgtgcttgc--tttacttgatttcttccatatttgt----ttatagGCACGTAGTGCATACCACGGAATTGGGTTAGTAAAATTAATGGGAAGAAGTAGTGGATTCATAGCCATGCATGCTTCTCTTTCCAGTGGACAGATTGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ggatacccttttgcttgtaatgttcttgaatcctgttataatctcgacctgccagGCTCGTAGTGCATATCATGGCATCGGGCTTGTAAAACTGATGGGAAGAAGCAGCGGCTTTATAGCAATGCACGCTTCGCTTTCAAGCGGTCAGATTGATA
                                 tgttataat  TA-rich tract