1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...tttttctgcttttatcattcaggttttgtatcttcatgggtctggttagagttacatattttcagtgatatattctgacctctgcaaacaatgtccatagGAAAACAAAGGTCTGATGCTGTTAGAACAGAACCTCTGCTTTTGGATGTTAATGGTCATTCATTTTGGAGATTAAATGGCTATTCTGGTGAACCAGATAT
species | Vitis vinifera |
transcript | Vv14s0083g00200.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
ttagagttacatattttcagtgatatattctgacctctgcaaacaatgtccatagGAAAACAAAGGTCTGATGCTGTTAGAACAGAACCTCTGCTTTTGGATGTTAATGGTCATTCATTTTGGAGATTAAATGGCTATTCTGGTGAACCAGATAT
ttctgac putative branch site (score: 2)
ttacatatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttttctgcttttatcattcaggttttgtatcttcatgggtctggttagagttacatattttcagtgatatattctgacctctgcaaacaatgtccatagGAAAACAAAGGTCTGATGCTGTTAGAACAGAACCTCTGCTTTTGGATGTTAATGGTCATTCATTTTGGAGATTAAATGGCTATTCTGGTGAACCAGATAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- -ttctgct
- - - - - - - -cattcag
- - - - - - - - - - - - - - - -cttcatg
- - - - - - - - - - - - - - - - - - - ggtctgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgacctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaaaca