1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtttcatagcctctcagttgcaaaccttcaaggatctgttctttaaattcacaaatgtgaactattcttcagcttcttaacccagtctctccatctgcagTTAAATCCAGAAAAAAACCATGGGGATCTCCAGGGTTTCAGTAGGGAACCTAGAGCAGGCAGTTATTCTGCTCCAATAATTGCAGAGAAGAGTGATCCAT
species | Vitis vinifera |
transcript | Vv14s0068g01470.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
aattcacaaatgtgaactattcttcagcttcttaacccagtctctccatctgcagTTAAATCCAGAAAAAAACCATGGGGATCTCCAGGGTTTCAGTAGGGAACCTAGAGCAGGCAGTTATTCTGCTCCAATAATTGCAGAGAAGAGTGATCCAT
tcttaac putative branch site (score: 2)
tctctccatct putative PPT
aactatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttcatagcctctcagttgcaaaccttcaaggatctgttctttaaattcacaaatgtgaactattcttcagcttcttaacccagtctctccatctgcagTTAAATCCAGAAAAAAACCATGGGGATCTCCAGGGTTTCAGTAGGGAACCTAGAGCAGGCAGTTATTCTGCTCCAATAATTGCAGAGAAGAGTGATCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - -cctctca
- - - - - - - - - - caaacct
- - - - - - - - - - - - - - - - - - - - - - - - -cacaaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cccagtc