Sequence
atgc intronic sequence ATGC exonic sequence...ggttttgcaaaccattctcattagagtttttgtatttaattacattatactggaattataccaatttaatctctttgtcttgaaattatgacaatcctagATGGTTTAATAGCATAACTTGCCCCGTTATGCTCTCAACTTTGGAGGATGGGAAGATTGTGAAAGGACTAGCAGGAATTCCTTCTGAAGGGCCAACTTTG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G05580.1 (Glycine max), 3'ss of exon 9
---------------------------------------ggttttgcaaaccattctcattagagtttttgtatttaattac--attatactggaattataccaatt-taatctctttgtcttgaaattatgacaatcctagATGGTTTAATAGCATAACTTGCCCCGTTATGCTCTCAACTTTGGAGGATGGGAAGATTGTGAAAGGACTAGCAGGAATTCCTTCTGAAGGGCCAACTTTG---
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gtataaacaaggttaatttgatcatataagccatcaattgcaatcgacaagagacttcat-agtatatatatattgattaactgattgcagtataatgaaactagttataacattgacacctttcacttataatgcttccagTTTGT---ATAACCTTGTCTCAACTGTAATGCTCTCAACTTTGGAGGATGGGACTATTGTAAAAGGCCTTGCTGGAATTCCTTCAGAGGGGCCTGTTTTGTTT
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA19G27200.1 (Glycine max), 3'ss of exon 9
ggttttgcaaaccattctcattagagtttttgtatttaattacattatactgg--aattatacca-atttaatctctttgtcttgaaattatgacaatcctagATGGTTTAATAGCATAACTTGCCCCGTTATGCTCTCAACTTTGGAGGATGGGAAGATTGTGAAAGGACTAGCAGGAATTCCTTCTGAAGGGCCAACTTTG
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---ctggcgatttttctttgttcattttttattaactgattgtagtataatcattaatcaaactagatataagattgacacctttcaattgtaatgcttccagTTTGTTTAACCTTATTGCAAGTGCTGTAATGCTCTCAACTTTGGAGGATGGGACGCTTGTAAAAGGCCTTGCTGGAATTCCTTCAGAGGGGCCTGTTTTG
upper sequence: Vv14s0068g01430.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G05570.1 (Glycine max), 3'ss of exon 11
ggttttgcaaaccattctcattagagtttttgtatttaattacattatactggaattataccaatt-taatctctttgtcttgaaattatgacaatcctagATGGTTTAATAGCATAACTTGCCCCGTTATGCTCTCAACTTTGGAGGATGGGAAGATTGTGAAAGGACTAGCAGGAATTCCTTCTGAAGGGCCAACTTTG----------------------------------------------
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-----------------------------------------------tagtataatcaaactaattataagattgacacctttcacttataatacttccagtttgtttaaccttattgcaagtgctgtaatgctctcaactttggagGATGGAACAATTGTAAAAGGCCTTGCTGGAATTCCTTCAGAGGGGCCTGTTTTGTTTGTTGGGTACCACATGCTACTGGGATTAGAAAAAATTCCCCTGG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tatactggaattataccaatttaatctctttgtcttgaaattatgacaatcctagATGGTTTAATAGCATAACTTGCCCCGTTATGCTCTCAACTTTGGAGGATGGGAAGATTGTGAAAGGACTAGCAGGAATTCCTTCTGAAGGGCCAACTTTG
atttaat putative branch site (score: 4)
aattataccaatttaa TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
ggttttgcaaaccattctcattagagtttttgtatttaattacattatactggaattataccaatttaatctctttgtcttgaaattatgacaatcctagATGGTTTAATAGCATAACTTGCCCCGTTATGCTCTCAACTTTGGAGGATGGGAAGATTGTGAAAGGACTAGCAGGAATTCCTTCTGAAGGGCCAACTTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - -caaacca
- - - - - - - - - - - - - - - - - - - - - - - atactgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -ataccaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaatta