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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtgtcccattatacttgtttttctatctctgtttattctcaaatcttcatttccccactctgctgttgtgcgcgcttgtataattgtgtatctctaacctgtgccttgatttcctgctcttattttctctgtcaaagctctcaataatctgaaaattttgttgattagGTATACCTTTTGCGGGCTGGCTACAATGGTTCTGATCGGTGAAGTTAATCGTTTGGACTTGACTAGTTTAATT

Basic information

species Vitis vinifera
transcript Vv14s0066g01310.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|161717613|gb|FC065626.1|FC065626
EST:     ACTTATGAAGGTGGTATCTCTGGTGAACCTGGTTCTGAAGCTCATGGTGG                         GTATACCTTTTGCGGGCTGGCTACAATGGTTCTGATCGGTGAAGTTAATCG
genomic: ACTTATGAAGGTGGTATCTCTGGTGAACCTGGTTCTGAAGCTCATGGTGGgtatgtgtcc ... tgttgattagGTATACCTTTTGCGGGCTGGCTACAATGGTTCTGATCGGTGAAGTTAATCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgctcttattttctctgtcaaagctctcaataatctgaaaattttgttgattagGTATACCTTTTGCGGGCTGGCTACAATGGTTCTGATCGGTGAAGTTAATCGTTTGGACTTGACTAGTTTAATT
                                          ttttgtt  CT-rich tract
                             aataatctgaaaattt  TA-rich tract