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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaactttctgagtcttgtatgcaagagaaacaatattaacgttttgtctgagctctgaaatcatccttcaatcactttctttgtggaacctgctgaattgatgttgttatctactagGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAG

Basic information

species Vitis vinifera
transcript Vv14s0066g01050.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
-------gtaaaactttctgagtcttgtatgcaagagaaacaatattaacgttttgtctgagctctgaaatcatccttcaatcactttctttgtggaacctgctgaattgatgttgttatctactagGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAG
         |     | |   || |||| |  ||| |   |  || |  | |  ||  || |  |||         |   || |  | || ||  |    || |     |     ||| | |   ||||  | ||||| || ||||||||||| |||||||| |||||||| ||||| || ||||| || || || ||||||||||||||||| |||||||| 
gtagggcacaggcgatgcacggtgttgtgttgaagggtggcg-tacttgcttgctggttgtga-ctgttgcgggagtgttatga--tgctgtggagtgtatgttattgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA

upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: PP1S60_85V6.1 (Physcomitrella patens), 3'ss of exon 8
-------gtaaaactttctgagtcttgtatgcaagagaaacaatattaacgttttg--tctgagctctgaaatcatccttcaatcactttctttgtggaacctgctgaattgatgttgttatctactagGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAG
         |     | |   |  |||| |  ||| |   |  || |  | |  ||  | |||    ||      |  |   ||    |    |||| |   || |     |  ||  || | |   ||||  | || || || ||||||||||| || ||||| |||||||| ||||| || ||||| || || || ||||||||||||||||| |||||||| 
gtagggcacaggcggtgcacggcgttgtgttgaagggtggcg-tacttgcttgctggttgtgactgttgcgggggtgttatgatgctgtggagtgtg-agtatgttattgaggagtacttgtgtggcagGTGTTGGGAACACCGACTCGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCGTGGCACAAA

upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: PP1S306_62V6.1 (Physcomitrella patens), 3'ss of exon 7
-----------gtaaaactttctgagtcttgtatgcaagagaaacaat----attaacgttttgtctgagctctgaaatcatccttcaatcactttctttgtggaacctgctgaattgatgttgttatctactagGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAG
           ||   ||    ||    |||| || ||| |   |  |     ||  || ||||  |     |||   | ||| |        |   | || | |    | |||   || |||    | |   ||||  | ||||| || ||||||||||| |||||||| |||||||| ||||| || ||||| || || |||||||||||||| ||||| |||||||| 
gtgggacacacgtggtacacgttg---tttgtgtggaagggtcgccttctgggttggcggtttggtttgtagctgtggt-atcttgttcgtgttggatgtgagtatggcgttgaccagacgtttccgtgtggcagGTTTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACAGAGTTCAAGTTTCCACAAATCAAGGCGCACCCGTGGCACAAA

upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: PP1S52_55V6.1 (Physcomitrella patens), 3'ss of exon 8
----------------------------------------------------------------------gtaaaactttctgagtcttgtatgcaagag--aaacaatattaacgttttgtctgagctctgaaatcatccttcaatcactttctttgtggaacctgc---tgaattgatgttgttatctactagGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAG
                                                                       | |||  |  ||  |  | | |  |   |  |     | ||   | || |  || |   ||   | ||    |||  | |     ||| || | |     |     |||| || | |  || ||||  | ||||| || || |||||||| || ||||| |||||||| ||||| || ||||| || || || ||||| ||||||||||| |||||||||
gtatgttatacatggtagagtggaagcatatggagctgaagtcgtttgtactgatgtttgatgtgtatcgattaaaagtattgtattatatttaaagatgttagctgctcttgttgcttcgggtg-gtgttgcggtgatagcgcaag-agtgatactgtagagcttatgagtaggcggatggtgatgttgac-agGTGTTAGGGACACCTACACGTGAGGAGATAAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCTCAAATTAAGGCTCACCCGTGGCACAAG

upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
gtaaaactttctgagtcttgtatgcaagagaaacaatattaacgttttgtctgagctctgaaatcatccttcaatcactttctttgtggaacctgctgaattgatgttgttatctactagGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAG
                                             |  |  ||   |||       |  ||       ||| |||| |   |   ||   |  |   |    | | | ||||  | || || || ||||| ||||||||||| || |||||||||||||| || |||||||| ||||| || || || || || ||||||||||||
--------------------------------------------gtacgcatgcattcttg--ctcttttttttctgttttttttgcgagtcgctcttgctcaagacttgcttttgc-agGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG

upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: EFJ07923 (Selaginella moellendorffii), 3'ss of exon 9
gtaaaactttctgagtcttgtatgcaagagaaacaatattaacgttttgtctgagctc-tgaaatcatccttcaatcactttctttgtggaacctgctgaattgatgttgttatctactagGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAG
                                                    |  | | || | || | ||    |   | | |||| |   |   ||   |  |   |    | | | ||||  | || || || ||||| ||||||||||| || |||||||||||||| || |||||||| ||||| || || || || || ||||||||||||
----------------------------------------------------gtacgcatgcattcttgctctcttttttctttttgcgagtcgctcttgctcaagacttgcttttgc-agGTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG

upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: EFJ04915 (Selaginella moellendorffii), 3'ss of exon 8
gtaaaactttctgagtcttgtatgcaagagaaacaatattaacgttttgtctgagctctgaaatcatccttcaatcactttctttgtggaacctgctgaat--tgatgttgttatctactagGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAG
                                                               |   |      |   || | || |||   |||     |  | | ||||   |     |||| ||||| || || ||||| ||||| ||||||||||||||||| ||||| || || || || ||||| ||||||||||| ||||| |||||||||
--------------------------------------------------------------gttggctcgttgtt-tttgccttatggtggctgggcgctcataaagttggacttgggcagGTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCACCCTTGGCACAAG

upper sequence: Vv14s0066g01050.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: EFJ10962 (Selaginella moellendorffii), 3'ss of exon 8
gtaaaactttctgagtcttgtatgcaagagaaacaatattaacgttttgtctgagctctgaaatcatccttcaatcactttctttgtggaacctgctgaat--tgatgttgttatctactagGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAG
                                                               |   |      |   || | || |||   |||     |  | | ||||   |     |||| ||||| || || ||||| ||||| ||||||||||||||||| ||||| || || || || ||||| ||||||||||| || || |||||||||
--------------------------------------------------------------gttggctcgttgtt-tttgccttatggtggctgggcgctcataaagttggacttgcgcagGTTCTTGGAACCCCTACTCGCGAGGAGATCAAGTGTATGAATCCCAACTACACGGAATTCAAGTTCCCTCAAATCAAGGCCCATCCTTGGCACAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccttcaatcactttctttgtggaacctgctgaattgatgttgttatctactagGTACTTGGGACGCCAACTCGTGAGGAAATCAAGTGTATGAATCCAAACTATACTGAGTTTAAATTCCCACAAATCAAGGCTCACCCCTGGCACAAG
                                 aattgat  putative branch site (score: 4)
             tttcttt  TA-rich tract