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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttctttacctaaaaccattcttttttgttcatttctaatttcctgttgacaaagaaaggctttttatatttaatattctgggagttaattttcatgtatagcttctattcgagGGAAAGGTCAATCCAACACAGTGTGAGGCTCTGACTATGGTCTGTGCTCAG

Basic information

species Vitis vinifera
transcript Vv14s0060g01700.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g01700.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G010823_T01 (Zea mays), 3'ss of exon 11
gtgagttctttacctaaaaccattcttttttgttcatttctaatttcctgttgacaaagaaaggctttttatatttaatattctgggagttaattttcatgtatagcttctattcgagGGAAAGGTCAATCCAACACAGTGTGAGGCTCTGACTATGGTCTGTGCTCAG
              |||    | | || ||   ||||       ||  |||      |  || |        |   |  ||| ||    ||   |||||  |    ||| |     |||| || || |||||||| ||||||||||||||||| ||||| ||||| |||
-------------gtaagcagactgttattatatcatgatatggtttttgtatgttgatcaacg------gaagacagcattgtgaagcttctgtttcaacttgtacttttc----agGGGAAAGTTAATCCAACCCAGTGTGAGGCTCTGACAATGGTTTGTGCACAG

upper sequence: Vv14s0060g01700.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT5G50950.2 (Arabidopsis thaliana), 3'ss of exon 11
gtgagttctttacctaaaaccattcttttttgttcatttctaatttcc---tgttgacaaagaaaggctttttatatttaatattctgggagttaattttcatgtatagcttctattcgagGGAAAGGTCAATCCAACACAGTGTGAGGCTCTGACTATGGTCTGTGCTCAG
        | |   |  ||   ||   | | |||| | | |  |||||   ||  |        |  | |||||| ||| |||   |  || | ||||   |  | ||   | | |   |||||||||| ||||| ||||||||||||||  |||||||||| |||||||| 
-------gtatgaatgcaattttttcctatggttcttatgtcctttccctctgcggctctgcctataccttttatttttcatagattttgattcaattg--aattttaatctatctctcagGGAAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCTCAA

upper sequence: Vv14s0060g01700.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT2G47510.1 (Arabidopsis thaliana), 3'ss of exon 12
gtgagttctttacctaaaaccattcttttttgttcatttctaatttcctgttgacaaagaaaggctttttatatttaatattctgggagttaattttcatgtatagcttctattcgagGGAAAGGTCAATCCAACACAGTGTGAGGCTCTGACTATGGTCTGTGCTCAG
                               ||     |  ||| | |  ||| |         |||||  | || | || | | |   || |  |  || | || ||  |  || |||| ||||| ||||| ||||||||||||||  |||||||||| ||||| |||
-------------------------------gtatgaatgcaatcttcctttg-ctcttctgtccttttctttttcactagttttga--ttcaaatgaatttttatctctttctc-agGGGAAGGTAAATCCTACACAGTGTGAGGCCTTGACTATGGTTTGTGCACAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gctttttatatttaatattctgggagttaattttcatgtatagcttctattcgagGGAAAGGTCAATCCAACACAGTGTGAGGCTCTGACTATGGTCTGTGCTCAG
                        agttaat  putative branch site (score: 4)
                                           cttctattc  putative PPT
     ttatatttaatattct  TA-rich tract