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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tcattccaatttggttgataatagatactcattcttcctcctgtctaattcttgtaatcatccagtccatttgccaaatctaatatggttgtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG

Basic information

species Vitis vinifera
transcript Vv14s0060g00600.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G22600.3 (Glycine max), 3'ss of exon 9
-----tcattcca--atttggttgataatagatactcattcttcctcctgtctaattcttgtaatcatccagtccatttgccaaatctaatatggttgtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG
       |||  |  | ||| |  || ||| |       |  |   | |||  | |  || ||| |||  |    ||    ||  | |  | || ||||  |  |||||| ||||||||||||||||||| || ||||| ||||||||||| || |||||||| || |||||||| || |||||||| || ||||||||||||
ttggcctatttgatgacttgatcaattatataggtggccttgtttacttgttcagta-ttataa-catgtaaatgat----catttgttgtttg-ttgtgctgacagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G28530.1 (Glycine max), 3'ss of exon 9
----tcattcca--atttggttgataatagatactcattcttcctcctgtctaattcttgtaatcatccagtccatttgccaaatctaatatggttgtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG
      |||  |  | ||| |  || ||| |   |   |      | | |  | | |  ||| |     |   ||| |     |||   | | || || ||   ||||| ||||||||||||||||||| || ||||| ||||||||||| || |||||||| || |||||||| || |||||||| || ||||||||||||
tggcctatttgatgacttgatcaattatataggttgccttgcttacttatgcagtgccagtatt-----ataacatgtaaatgatcatttgttgt-gtgttaatagGTTCTGGGCACTCCAACAAGGGAAGAGATTAAGTGCATGAACCCTAATTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA19G41420.2 (Glycine max), 3'ss of exon 9
----tcattccaatttggttgataa--tagatactcattcttcctcctgtctaattcttgtaatcatccagtccatttgccaaatctaatatggttgtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG
      ||  |   ||   |||| |  | ||||   |  ||| ||  ||||  | | |    ||| |  |     |  || | ||| | | |  ||| ||| | ||||| |||| |||||||||||||| || || || |||||||| || ||||||||||| || |||||||| || |||||||| || ||||||||||||
gtttgaatcactgattctctgatcaatttgatagataggcttgct--tgtcacaatgtcagtatc-tttaacgtgtaagc-acatccacttt--ttgctttggtagGTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTATACAGAATTTAAATTCCCACAGATTAAAGCACATCCATGGCACAAG

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA03G38850.2 (Glycine max), 3'ss of exon 9
tcattccaatt--tggttga-taatagatactcattcttcctcctgtctaattct-tgtaatcatccagtccatttgccaaatctaatatggttgtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG
   ||  |||   || ||   | ||  ||  | ||   |   | ||  |    |  ||| |  |||   |  |  ||  || | |    | |||| ||| | ||||| |||| |||||||||||||| || || || |||||||| || ||||| || || || |||||||| || |||||||| || ||||||||||||
-tgtttgaatcactgattctctgatcaat-ttgatggataggcttggttgtcacaatgtcagtatct--ttaacgtgtaaactgtccacttgttgctttggtagGTTCTGGGAACTCCAACAAGGGAAGAGATAAAGTGCATGAATCCTAACTACACGGAATTTAAATTCCCACAGATTAAAGCGCATCCATGGCACAAG

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: PP1S60_100V6.1 (Physcomitrella patens), 3'ss of exon 8
------------------------tcattccaatttggttgataatagat-actcattcttcctcctgtctaattcttgtaatcatccagtccatttgccaaatctaatatggttgtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG
                        |  |    |   |     || | | |  ||  || |  ||  ||    | | || | ||  |   |    | ||  |  |  |  |    | || | |||||| ||||| || || ||  | ||||| || || |||||||| || ||||| || |||||||| || || ||||| || ||||||||||||||||| 
gtagggcacaggcgatgcacggtgttgtgttgaagggtggcgtacttgcttgctggttgtgactgttgcgggagtgttatgatgctgtggagtgtatgtta--ttgaggaaaagttttgtggcagGTGTTGGGGACACCGACTCGTGAGGAGATCAAGTGCATGAATCCGAACTACACGGAGTTCAAGTTTCCGCAAATCAAGGCTCACCCATGGCACAAA

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: EFJ07216 (Selaginella moellendorffii), 3'ss of exon 9
tcattccaatttggttgataatagatactcattcttcctcctgtctaattcttgtaatcatccagtccatttgccaaatctaatatggttgtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG
                     ||   |  ||||||| ||| | | |   | || |  |         |  ||||  ||          ||| |||||||||| || || ||||| ||  | |||||||| ||||||||||| || ||||| || ||||| || ||||| || |||||||| || || |||||||||
--------------------gtacgcatgcattcttgctcttttttttctgttttttttgcgagtcgctcttgctcaa-------gacttgcttttgcagGTCTTAGGTACTCCTACTCGCGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG

upper sequence: Vv14s0060g00600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: EFJ07923 (Selaginella moellendorffii), 3'ss of exon 9
tcattccaatttggttgataatagatactcattcttcctcctgtctaattcttgtaatcatccagtccatttgccaaatctaatatggttgtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG
                     ||   |  ||||||| |||   | |  ||||| |    |  |  ||   ||||  ||          ||| |||||||||| || || ||||| ||  |||||||||| ||||||||||| || ||||| || ||||| || ||||| || |||||||| || || |||||||||
--------------------gtacgcatgcattcttgctctctttt--ttctttttgcgagtcgctc---ttgctcaa-------gacttgcttttgcagGTCTTAGGTACTCCTACTCGGGAGGAAATCAAATGCATGAATCCAAACTACACGGAGTTTAAGTTCCCTCAGATTAAAGCGCATCCCTGGCACAAG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|34546629|gb|CF514861.1|CF514861
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|71856504|gb|DT005559.1|DT005559
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCCATGAACCCCAAC
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGC-ATGAACCCCAAC
EST: gi|156737184|gb|EV241305.1|EV241305
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|161714435|gb|FC064434.1|FC064434
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|34546808|gb|CF515040.1|CF515040
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|110700433|gb|EE078469.1|EE078469
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTCTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|110399980|gb|EC966516.1|EC966516
EST:     GGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: GGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|110712249|gb|EE089658.1|EE089658
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGTACTCCAACAAAGGAGGAAATTAAATGCATGAACCCCAAC
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAAC
EST: gi|349828876|gb|FQ419209.1|FQ419209
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|30134321|gb|CB919659.1|CB919659
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|87584334|gb|DY473544.1|DY473544
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|110424518|gb|EC990881.1|EC990881
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|110367470|gb|EC931404.1|EC931404
EST:     GATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: GATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|110416992|gb|EC983012.1|EC983012
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|110423991|gb|EC990344.1|EC990344
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|30302437|gb|CB979231.1|CB979231
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|110424369|gb|EC990727.1|EC990727
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|34543640|gb|CF511872.1|CF511872
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|110371622|gb|EC935735.1|EC935735
EST:     GAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: GAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|30136122|gb|CB921460.1|CB921460
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|110408420|gb|EC974056.1|EC974056
EST:     AGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: AGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|352789914|gb|FQ478729.1|FQ478729
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|156737183|gb|EV241304.1|EV241304
EST:     CTCTGTTT-CTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|32245847|gb|CD711666.1|CD711666
EST:     GATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: GATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|110694879|gb|EE072256.1|EE072256
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|34547149|gb|CF515381.1|CF515381
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|34543715|gb|CF511947.1|CF511947
EST:     TTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: TTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|34547238|gb|CF515470.1|CF515470
EST:     GAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: GAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|37187368|gb|CF606721.1|CF606721
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|33404123|gb|CF209750.1|CF209750
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|110729460|gb|EE105432.1|EE105432
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|110386931|gb|EC951566.1|EC951566
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|30132732|gb|CB918071.1|CB918071
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|30129063|gb|CB914402.1|CB914402
EST:     CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: CTCTGTTTCCTGGAGAGAGTGGAGTCGATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
EST: gi|27582365|gb|CB005060.1|CB005060
EST:     GATCAGCTTGTTGAGATTATCAAG                         GTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT
genomic: GATCAGCTTGTTGAGATTATCAAGgtaactacat ... gtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taattcttgtaatcatccagtccatttgccaaatctaatatggttgtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG
                                atctaat  putative branch site (score: 3)
                                           ttgttttt  putative PPT
                              aaatctaatat  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tcattccaatttggttgataatagatactcattcttcctcctgtctaattcttgtaatcatccagtccatttgccaaatctaatatggttgtttttgcagGTTTTGGGCACTCCAACAAGGGAGGAAATTAAATGCATGAACCCCAACTATACAGAGTTCAAATTCCCCCAAATTAAAGCTCACCCATGGCACAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTCA
tcattcc
- - - - - -tggttga
- - - - - - - - - - - - - -ctcattc
- - - - - - - - - - - - - - - - - -tcctcct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -tcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccatttg
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