1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aatggaatttatgcgctctttattttttcttctgttctttttgggtttgtaactgaccctgcagatttataattgggaaagtgcgtggtggtctttacagGTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTACGCTGCAGAGCATCTTGCAATTAGGTCATTCGTGAAAGGCCTTGAAGAT
species | Vitis vinifera |
transcript | Vv14s0036g00430.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAG GTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTAEST: gi|46918077|gb|CN547406.1|CN547406
genomic: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAGgtaatttgtt ... gtctttacagGTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTA
EST: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAG GTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTAEST: gi|110357644|gb|EC921282.1|EC921282
genomic: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAGgtaatttgtt ... gtctttacagGTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTA
EST: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAG GTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTAEST: gi|71866162|gb|DT015217.1|DT015217
genomic: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAGgtaatttgtt ... gtctttacagGTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTA
EST: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAG GTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTAEST: gi|22008216|gb|BQ793250.1|BQ793250
genomic: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAGgtaatttgtt ... gtctttacagGTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTA
EST: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAG GTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTAEST: gi|71877245|gb|DT026300.1|DT026300
genomic: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAGgtaatttgtt ... gtctttacagGTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTA
EST: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAG GTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTAEST: gi|352776869|gb|FQ474176.1|FQ474176
genomic: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAGgtaatttgtt ... gtctttacagGTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTA
EST: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAG GTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTAEST: gi|110359437|gb|EC920918.1|EC920918
genomic: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAGgtaatttgtt ... gtctttacagGTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTA
EST: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAG GTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTAEST: gi|110406253|gb|EC971820.1|EC971820
genomic: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAGgtaatttgtt ... gtctttacagGTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTA
EST: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAG GTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTA
genomic: GCTGCTCCCTCTTTGCCATGTGTTTTTGGTGTCACTGCTCTATTTTTGAGgtaatttgtt ... gtctttacagGTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTA
tttgtaactgaccctgcagatttataattgggaaagtgcgtggtggtctttacagGTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTACGCTGCAGAGCATCTTGCAATTAGGTCATTCGTGAAAGGCCTTGAAGAT
aactgac putative branch site (score: 2)
tctttac putative PPT
agatttataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aatggaatttatgcgctctttattttttcttctgttctttttgggtttgtaactgaccctgcagatttataattgggaaagtgcgtggtggtctttacagGTTAGGTTTGATAGCTGTTGGAGCCTTAATATTGGCATCTTTCATGACTTACGCTGCAGAGCATCTTGCAATTAGGTCATTCGTGAAAGGCCTTGAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
aatggaa
- - - - -tatgcgc
- - - - - - - - - - - - - - cttctgt
- - - - - - - - - - - - - - - - - - - - - gggtttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ccctgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgggaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcgtgg