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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttaataacgtttcttcaattcttctttgttccttttccccccctttttaaggttgcttaacctctaatgcattaacttccatttgactacagCTTGTGATGTTCCTGGAATCAAAAGATTAGTTCCGGCACAATGGAGGGACTGGGAATTTTTTGATAATATTTATAAACTAGTTGGGGTGCCAGTTGTCAC

Basic information

species Vitis vinifera
transcript Vv14s0030g01740.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G454952_T01 (Zea mays), 3'ss of exon 9
gtttgttaataacgtttcttcaattcttctttgttccttttccccccctttttaaggttgcttaacctctaatgcattaacttccatttgactacagCTTGTGATGTTCCTGGAATCAAAAGATTAGTTCCGGCACAATGGAGGGACTGGGAATTTTTTGATAATATTTATAAACTAGTTGGGGTGCCAGTTGTCAC
                   |   || | ||||||||  | |  |    |||   ||  |||  ||||    |  | |||||||    ||  | ||||| ||||||||||| || |||||||||||| ||||  || |||||||||| |||||| | ||||| ||||| || ||  ||| ||| || || ||||||||
------------------gttttttttcctttgttctgtctttcttattttgctagcatgcccaaccatacacac-ttaacttggtgtt--ccacagCCTGTGATGTTCCGGGTATCAAAAGATTACTTCCATCAGAATGGAGGGAATGGGAAATGTTTGACAATATCTACAAGTTAGATGGTGTCCCTGTTGTCAC

upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: EFJ20342 (Selaginella moellendorffii), 3'ss of exon 9
gtttgttaataacgtttcttcaattcttctttgttccttttccccccctttttaaggttgcttaacctctaatgcattaacttccatttgactacagCTTGTGATGTTCCTGGAATCAAAAGATTAGTTCCGGCACAATGGAGGGACTGGGAATTTTTTGATAATATTTATAAACTAGTTGGGGTGCCAGTTGTCAC
                                     |      | |    |    ||| |||    |  | ||  || |  | | | ||   ||||||||||||||||||||||||||||   |  | || | ||||||| |||| |  || ||||| || || || || || || || || ||||||||  ||||
------------------------------------gtgggaagcacaaactcgtagtttctt--tttgaagtggctttatcttcttgtgtgcacagCTTGTGATGTTCCTGGAATCAAAAAGCTTTTGCCAGAACAATGGCGGGAGTACGAGTTTTTCGACAAGATATACAATCTCGTAGGAGTGCCAGTGATCAC

upper sequence: Vv14s0030g01740.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: EFJ28321 (Selaginella moellendorffii), 3'ss of exon 9
gtttgttaataacgtttcttcaattcttctttgttccttttccccccctttttaaggttgcttaacctctaatgcattaacttccatttgactacagCTTGTGATGTTCCTGGAATCAAAAGATTAGTTCCGGCACAATGGAGGGACTGGGAATTTTTTGATAATATTTATAAACTAGTTGGGGTGCCAGTTGTCAC
                                     |      | |    |    ||| |||    |  | ||  || |  | | | ||   ||||||||||||||||||||||||||||   |  | || | ||||||| |||| |  || |||||||| || || || || || || || ||||||||  ||||
------------------------------------gtgggaagcacaaactcgtagtttctt--tttgaagtggctttatcttcttgtgtgcacagCTTGTGATGTTCCTGGAATCAAAAAGCTTTTGCCAGAACAATGGCGGGAGTACGAGTTTTTTGACAAGATATACAATCTCGTAGGAGTGCCAGTGATCAC

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|294965914|gb|GW839253.1|GW839253
EST:     GCTACTAATAAGAAGATTGTGAGAGCAGATGCTTATGTTGCAG                         CTTGTGATGTTCCTGGAATCAAAAGATTAGTTCCGGCACAATGGAGGGACT
genomic: GCTACTAATAAGAAGATTGTGAGAGCAGATGCTTATGTTGCAGgtttgttaat ... ttgactacagCTTGTGATGTTCCTGGAATCAAAAGATTAGTTCCGGCACAATGGAGGGACT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccccctttttaaggttgcttaacctctaatgcattaacttccatttgactacagCTTGTGATGTTCCTGGAATCAAAAGATTAGTTCCGGCACAATGGAGGGACTGGGAATTTTTTGATAATATTTATAAACTAGTTGGGGTGCCAGTTGTCAC
                                      cttccattt  CT-rich tract
      tttttaa  TA-rich tract