Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   		19  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtacagttttctcccagaactcaaccaatgcaaatattcccctgcctctttcttatgttttgccattatttttttcctttagcatatgatgttttctcccttttttctttctctatctctctctctctctcttttctgatctttttctgcaatactcatcctttgatgcccaattctgtttatactctcagTTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAGGAACATCCTATTTTGCAACTGGCATTGCATGATGATGGCATATGGGCTG

Basic information

species Vitis vinifera
transcript Vv14s0030g01350.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA19G43070.1 (Glycine max), 3'ss of exon 9
gtgagtacagttttctcccagaactcaaccaatgcaaatattcccctgcctctttcttatgttttgccattatttttttcctttagcatatgatgttttctcccttttttctttctctatctctctctctctctcttttctgatctttttctgcaatactcatcctttgatgcccaattctgtttatactctcagTTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAGGAACATCCTATTTTGCAACTGGCATTGCATGATGATGGCATATGGGCTG
                              | || |||  |||  |||    |     |  |    | ||| ||| ||    |||  | ||            |||   | | | |  |      ||||  | || | | | |  |      |  |  ||| || | | ||| |  ||||| ||||| |  | |||||||||||||||| |||   || |||||||||| |||||||||||||   || || |||||| | ||| |||| |||||||||||| ||||||||| ||
---------------------------gtgagtg-aaaccttctactgaaatta----acatcaaactattttttattattattattacat------------cttgagtttatgtgaaatcacatctccttttcctgtttaactt------gtgaacctcgtcttctaatgtcatattct-tttatgccttaagTTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAATTGGCTTTGCATGATGATAGCATATGGGTTG

upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA03G40440.4 (Glycine max), 3'ss of exon 9
gtgagtacagttttctcccagaactcaaccaatgcaaatattcccctgcctctttcttatgttttgccattatttttttcctttagc-atatgatgtt-ttctcccttttttctttctctatctctctctctctctcttttctgatctttttctgcaatactcatcctttgatgcccaattctgtttatactctcagTTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAGGAACATCCTATTTTGCAACTGGCATTGCATGATGATGGCATATGGGCTG
                                                     |   |      | | ||||   ||  | |  | | ||||  | || || |  ||   |  |     ||| |  |    | |||| |||      ||    ||  |  |||||| | | |||||  ||||| |||||||  | |||||||||||||||| |||   || |||||||||| |||||||||||||   || || |||||| | ||| |||| |||||||||||| ||||||||| ||
----------------------------------------------------gtgagtgaaaccttctattaaaattaacatcaaactatatttttttattattactacatcttgaacttatgtgacatcatatctccttttcctgtttaacttgtgaacctcatcttctaatgccgtattct-tttataccttaagTTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAATTGGCTTTGCATGATGATAGCATATGGGTTG

upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G30050.1 (Glycine max), 3'ss of exon 8
gtgagtacagttttctcccagaactcaaccaatgcaaatattcccctgcctctttcttatgttttgccattatttttttcctttagcatatgatgttttctcccttttttctttctctatctctctctctctctcttttctgatctttttctgcaatactcatcct-ttgatgcccaattctgtttatactctcagTTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAGGAACATCCTATTTTGCAACTGGCATTGCATGATGATGGCATATGGGCTG
                                                                     | | |    |  ||    | ||  |   || ||     |||   | | |||       | ||||  | || ||  |||  |  |  |  ||  |  |  |||| |  |||||| |||||  |   ||||||||||||||||||||   |||||||||||| |||||||||  ||   |||| |||||||| | ||| |||| |||||||| ||| |||| |||| ||
--------------------------------------------------------------------gtgagtgcagtttttcgataaatttttaattatcatgactttgaatttatatga-----tgtctccttgttttg--cttaattagtgaagcttgtgttactgattcgtaattct-tttatttttgtagTTATACTTGACAGACTTGCAAACAAGAGAGAGTGTTTTGCTTTCAACCGGGGAAAATCCTATTCTTCAATTGGCTTTGCATGACGATAGCATTTGGGTTG

upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA19G42990.1 (Glycine max), 3'ss of exon 9
gtgagtacagttttctcccagaactcaaccaatgcaaatattcccctgcctctttcttatgttttgccattatttttttcctttagcatatgatgttttctcccttttttctttctctatctctctctctctctcttttctgatctttttctgcaatactcatcctttgatgcccaattctgtttatactctcagTTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAGGAACATCCTATTTTGCAACTGGCATTGCATGATGATGGCATATGGGCTG
                                                     |   |      | | ||||  |||  | |  | |   | || |||| |  | |      ||   | | || |  |   |||| |||      ||     |  |  ||| |  | | |||    ||||| ||||||| || |||||||||||||||| |||   || |||||||||| |||||||||||||   || || |||||| | ||  |||| |||||||||||| |||| |||| ||
----------------------------------------------------gtgagtgcaaccttctattaaatttaacatcaaac---taattttttttatcatcacatcttgaatttgtcacattacatctccttttcttgtttaactagtgaacctcgtattctaatgttgtattct-tttataccctaagTTATACTTGACAGATTTGCAAACTAGAGAGAGTAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAGTTGGCTTTGCATGATGATAGCATTTGGGTTG

upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA03G40360.1 (Glycine max), 3'ss of exon 9
gtgagtacagttttctcccagaactcaaccaatgcaaatattcccctgcctctttcttatgttttgccattatttttttcctttagcatatgatgttttctcccttttttctttctctatctctctctctctctcttttctgatctttttctgcaatactcatcctttgatgcccaattctgtttatactctcagTTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAGGAACATCCTATTTTGCAACTGGCATTGCATGATGATGGCATATGGGCTG
                                                     |   |  |   | | ||||  |||  | |  | |   |  | |||| |   |   |  |   | ||| || |      |||| |||      ||    ||  |  |||||| | | |||    ||||| ||||||| || |||||||||||||||| |||   || |||||||| | |||||||||||||   || || |||||| | ||  |||| |||||||||||| ||||||||  ||
----------------------------------------------------gtgagtgcgaccttctattaaatttaacatcaaac---tatttttttgttattacatcttgaatttatgtcacataacatctccttttcttgtttaacttgtgaacctcatcttctaatgttgtattct-tttataccctaagTTATACTTGACAGATTTGCAAACTAGAGAGAGCAGTTTGCTTTGCACAGGCGAGCACCCTATTCTTCAGTTGGCTTTGCATGATGATAGCATATGGATTG

upper sequence: Vv14s0030g01350.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT3G05090.1 (Arabidopsis thaliana), 3'ss of exon 9
gtgagtacagttttctcccagaactcaaccaatgcaaatattcccctgcctctttcttatgttttgccattatttttttcctttagcatatgatgttttctcccttttttctttctctatctctctctctctctcttttctgatctttttctgcaatactcatcctttgatgcccaattctgtttatactctcagTTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAGGAACATCCTATTTTGCAACTGGCATTGCATGATGATGGCATATGGGCTG
                                                                                        |  |  |    |   ||| ||||||||| |   | |||     ||     | | | ||  || |  |||  ||||   |       |  || |||||   |  |||||||||||||||||||||||| ||||| |||||| ||||||| ||||| ||||||||||| |||   ||| | || ||||| ||| || | ||||||| ||
---------------------------------------------------------------------------------------gtgagtagacaccaaacttgtttctttctttggttttct-----tccagcgtataacctccttttttaat-ttcatttat-------ctgttatgttt---ccgtcagTTATACTTGACAGACTTGGCAACAAGGGAGAGTGTTTTGCTGTGCACTAAGGAACATCCAATTCAACAATTAGCGTTGCAAGATAATAGTATATGGGTTG

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71881516|gb|DT030571.1|DT030571
EST:     CAAGCACCCCAACATTTAGCCATGTTTATAGTGGTGGGAGGGACCTTTCC                         TTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAG
genomic: CAAGCACCCCAACATTTAGCCATGTTTATAGTGGTGGGAGGGACCTTTCCgtgagtacag ... atactctcagTTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgatctttttctgcaatactcatcctttgatgcccaattctgtttatactctcagTTATACTTGACAGACTTGGCGACAAGAGAGAGTATTTTGCTTTGCACAAAGGAACATCCTATTTTGCAACTGGCATTGCATGATGATGGCATATGGGCTG
                                              tactctc  CT-rich tract
                                        tgtttata  TA-rich tract