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gtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttttatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacagGCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTATGTTGGTATGGATGCCTTGGACATTGAGAAATGGAGATTTGTGAGCAAA
species | Vitis vinifera |
transcript | Vv14s0030g00710.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAA GCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTAEST: gi|161720457|gb|FC070569.1|FC070569
genomic: TCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattt ... atttccacagGCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTA
EST: TCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAA GCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTAEST: gi|161720623|gb|FC070233.1|FC070233
genomic: TCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattt ... atttccacagGCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTA
EST: TCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAA GCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTA
genomic: TCCCATTACACGTGGCACAATGTTACAGAGAGTTCAAGAGTCACTACCAAgtatgtattt ... atttccacagGCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTA
taggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacagGCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTATGTTGGTATGGATGCCTTGGACATTGAGAAATGGAGATTTGTGAGCAAA
ttttaat putative branch site (score: 3)
tttccac putative PPT
ttttaatttctgtcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtattttcctgaaagcaattggaacattttttggtcaggatttatatttttatttcaaaaaataggtcattactggctgtatgcctgttttaatttctgtctataaaatttccacagGCATGCTTTTGCGACCTTGTCATTTGTAGCTGAGATTTTCATCTTCCTTTATGTTGGTATGGATGCCTTGGACATTGAGAAATGGAGATTTGTGAGCAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT