Sequence
atgc intronic sequence ATGC exonic sequence...cactaaattccatgtttatagcttgaatgttagctcacaaaataaatcagtctttattgatgtagtgggtaatataatttcttgattgaattcctttcagGCTATAATGGAGGTCGGAGAGGTCATACAATTTTATGATTCTGATAGGCGCTTTCCTGCGTGGGGATTTGGGGGAAGGACAATTGATGGTACCGTATCAC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv14s0030g00600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA03G40210.1 (Glycine max), 3'ss of exon 11
-cactaaattccatgtttatagcttgaatgttagctcacaaaataaatcagtctttattgatgtagtgggtaatataatttcttgattgaattcctttcagGCTATAATGGAGGTCGGAGAGGTCATACAATTTTATGATTCTGATAGGCGCTTTCCTGCGTGGGGATTTGGGGGAAGGACAATTGATGGTACCGTATCAC
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atgtatccttttacttcattatgttactgactaaattcaataacggggtggcattgtctgatccattgttttgcctaaccaacacagt-atttatctgtagGCTATAATGGAGGTTGGAGAAGTTATTCAGTTTTATGATTCTGATAGGCAGTTTCCTGCTTGGGGATTTGGAGGAAAGATACCTGGTGGTACTGTATCCC
upper sequence: Vv14s0030g00600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA19G42790.1 (Glycine max), 3'ss of exon 11
cactaaattccatgtttatagctt--gaatgttagctcacaaaataaatcagtctttattgatgtagtgggtaata----taatttcttgattga----------attccttt-cagGCTATAATGGAGGTCGGAGAGGTCATACAATTTTATGATTCTGATAGGCGCTTTCCTGCGTGGGGATTTGGGGGAAGGACAATTGATGGTACCGTATCAC
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--gtaagcttgatatctacttcttgtgaatgaatgattatgaacttt-tcaatcattaac-atgtgaagcgcaatagatccattgttttgcctaaccaacacagtatttatctgtagGCTATAATGGAGGTTGGAGAAGTTATTCAGTTTTATGATTCTGATAGGCAGTTTCCTGCTTGGGGCTTTGGAGGAAAGATACCTGGTGGTACCGTATCCC
upper sequence: Vv14s0030g00600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA03G40220.1 (Glycine max), 3'ss of exon 11
------------------------cactaaat--tccatgtttat-agctt---gaatgttagctcacaaaataaatca--gtctttattgat----gtagtggg--taatataattt---------------cttgattga------attccttt-cagGCTATAATGGAGGTCGGAGAGGTCATACAATTTTATGATTCTGATAGGCGCTTTCCTGCGTGGGGATTTGGGGGAAGGACAATTGATGGTACCGTATCAC
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gtaaccttgatatctactacttgtcaatgaatgatatatgattctgagcttttcaatcattaacttatgaaacacaataaggtcctgactaacttcaatagtgggggtggcattatctgatccattgtttttgcctaattaacacaatatttatttgtagGCTGTAATGGAGGTTGGAGAAGTTATTCAGTTTTATGATTCTGATAGGCAGTTTCCTGCTTGGGGTTTTGGAGGGAAGCTACCTGGTGGTACTGTATCCC
upper sequence: Vv14s0030g00600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G08860.1 (Arabidopsis thaliana), 3'ss of exon 11
cactaaattccatgtttatagcttgaatgttagctcacaaaataaatcagtctttattgatgtagtgggtaa-tataatttcttgattgaattcctttcagGCTATAATGGAGGTCGGAGAGGTCATACAATTTTATGATTCTGATAGGCGCTTTCCTGCGTGGGGATTTGGGGGAAGGACAATTGATGGTACCGTATCAC
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ctcagtataaaaccatcgtctcattaatttttctttcagtgtcgtgattcccttgatctattgtatgtataaacataatttggcttctgt-ttttttccagGCTATTATGGAAGTAGGAGAGGTCATCCAGTTTTATGATTCTGATAAGCGGTTTCCTGCCTGGGGGTTTGGAGGAAGAACATCGGATGGTTCTGTGTCCC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atcagtctttattgatgtagtgggtaatataatttcttgattgaattcctttcagGCTATAATGGAGGTCGGAGAGGTCATACAATTTTATGATTCTGATAGGCGCTTTCCTGCGTGGGGATTTGGGGGAAGGACAATTGATGGTACCGTATCAC
ttcctttc CT-rich tract
taatataatttcttga TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
cactaaattccatgtttatagcttgaatgttagctcacaaaataaatcagtctttattgatgtagtgggtaatataatttcttgattgaattcctttcagGCTATAATGGAGGTCGGAGAGGTCATACAATTTTATGATTCTGATAGGCGCTTTCCTGCGTGGGGATTTGGGGGAAGGACAATTGATGGTACCGTATCAC
cactaaa
- - - - -ccatgtt
- - - - - - - - - tagcttg
- - - - - - - - - - - - - - - - - - - aaaataa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tagtggg