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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttatattttccattatctgttgggctccaattgattatcagggagaattagggaggaaaaaagaagaaaaatctaagtagagccctaagcatatgggaactggatttgagactgcttttccttctaattcttatcttctttctttctcttaatctttttgtagGTTGCAGATGCAGTTCTTAGAGAATACATATTTGTTCACCTTGATAACAATTATGACAAATTCAATCTGCTCAT

Basic information

species Vitis vinifera
transcript Vv13s0084g00600.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G23500.1 (Glycine max), 3'ss of exon 4
gtaagttatattttccattatctgttgggctccaattgattatcagggagaattagggaggaaaaaagaagaaaaatctaagtagagccctaagcatatgggaactggatttgagactgcttttccttctaattcttatcttctttctttctcttaatctttttgtagGTTGCAGATGCAGTTCTTAGAGAATACATATTTGTTCACCTTGATAACAATTATGACAAATTCAATCTGCTCAT
                                                             ||    |   ||   ||    |       | |   |  || ||     | |  |||    |  |  ||||||  |||| |   |   ||   ||| |        |||| || || || ||| | |  || | |||||| ||||| || |||||||||| ||||||||||||||| |||||
------------------------------------------------------------taagggggtttaattttcccttttattgatttaatttgaggaaaggttttatttgaccatatgcctgtctaataattatatgaatgtctttgtttact--------agGTGGCTGAAGCTGTTTTGAAGGACTGCATATTAGTTCATCTGGATAACAATTTTGACAAATTCAATCTTCTCAT

upper sequence: Vv13s0084g00600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G26190.1 (Glycine max), 3'ss of exon 13
gtaagttatattttccattatctgttgggctccaattgattatcagggagaattagggaggaaaaaagaagaaaaatctaagtagagccctaagca-tatgggaactggatttga--gactgcttttccttctaattcttatcttctttctttctcttaatctttttgtagGTTGCAGATGCAGTTCTTAGAGAATACATATTTGTTCACCTTGATAACAATTATGACAAATTCAATCTGCTCAT
                                                               ||  |  |   ||| ||          ||   | | || | |  || |||    | |    | ||  ||||||  |||| |   ||  ||   ||| |        |||| || ||||| ||| | |  || | |||||| ||||| || |||||||||| ||||||||||||||| |||||
---------------------------------------------------------------aaggggggtgtaatttacccttttatttatttaatttgaggaaaggttttatttggccatatgtctgtctaatgattatatgagtttctttgtttact--------agGTGGCTGATGCTGTTTTGAAGGACTGCATATTAGTTCATCTGGATAACAATTTTGACAAATTCAATCTTCTCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agactgcttttccttctaattcttatcttctttctttctcttaatctttttgtagGTTGCAGATGCAGTTCTTAGAGAATACATATTTGTTCACCTTGATAACAATTATGACAAATTCAATCTGCTCAT
       ttttccttctaattct  CT-rich tract
                                        ttaatctttttgta  TA-rich tract