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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttggtatttgaggcggataatcttcttctccctctcatgtgtgacatttggtattttaggctgacaattttttctccctctgtcatgtagAGTGGCAGATCTATATGCTGCTTCTGGGACTTTTCCTGGCCTCAGCTGTTGCATTTTACATATTCTTCGAGAACTCCGACTCATTTTGGAACTTCCCCCT

Basic information

species Vitis vinifera
transcript Vv13s0074g00010.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0074g00010.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G33180.1 (Glycine max), 3'ss of exon 9
-----gttggtatttgaggcggata---------atcttcttctccctctcatgtgtgacatt--tggtattttaggctgacaatttt--ttctccctctgtcatgtagAGTGGCAGATCTATATGCTGCTTCTGGGACTTTTCCTGGCCTCAGCTGTTGCATTTTACATATTCTTCGAGAACTCCGACTCATTTTGGAACTTCCCCCT
      |   | ||  | ||  | |         |||   |  ||  ||| | |  | ||| |  ||    || |   ||||| |||   |   |  ||   | || |||||||||||||||| || ||||  ||||||| ||  | || |||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||| |
gttctctctctcttacacgcacacacttgcatgcatcccttcttcattctaacgccttacaataatgtctattcaatttgacattttcaatatcctttcaaacctgcagAGTGGCAGATCTATTTGGTGCTATTGGGACTATTTTTAGCATCAGCTGTTGCATTTTACATATTCTTTGAGAACTCTGATTCATTCTGGAACTTTCCCAT

upper sequence: Vv13s0074g00010.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G34380.1 (Glycine max), 3'ss of exon 9
-----gttggtatttgaggcggata---atcttcttctccctctcatgt-gtgacatttggtat-tttaggctgacaatttt--ttctccctctgtcatgtagAGTGGCAGATCTATATGCTGCTTCTGGGACTTTTCCTGGCCTCAGCTGTTGCATTTTACATATTCTTCGAGAACTCCGACTCATTTTGGAACTTCCCCCT
      |   | | | | ||    |   |||   |  ||   || | |  |||  ||   || | || |   ||||| |||   |   |  ||   | || ||| |||||||||||| || ||||  ||||||| ||  | || |||||||||||||||||||||||||| |||||||| || ||||| |||||||| ||| |
gttctctctctctctcacgcatgcatgcatcccttattcatcctaacgccgtgcaataatgtctattcaatttgacattttcaatatcctttcaaacctgcagAATGGCAGATCTATTTGGTGCTATTGGGACTATTTTTAGCATCAGCTGTTGCATTTTACATATTCTTTGAGAACTCTGATTCATTCTGGAACTTTCCCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

catgtgtgacatttggtattttaggctgacaattttttctccctctgtcatgtagAGTGGCAGATCTATATGCTGCTTCTGGGACTTTTCCTGGCCTCAGCTGTTGCATTTTACATATTCTTCGAGAACTCCGACTCATTTTGGAACTTCCCCCT
                       ggctgac  putative branch site (score: 3)
                                ttttttctccctctgt  putative PPT
                            acaatttttt  TA-rich tract