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...aaaactaatagtgagaagcatacattagcttcttatctgaaaccttcatacagtgtaatgatttttttctgaaatagtggtctcttgaatgttaatgcagGATTTGGATACAGAAATTATTGTTGCAACAACCAGAGGCCCATCCACAAACACAACTGCAGTTGCTGCTAATGTAGTTGTTGATGAGAGGCAGATGAATG
species | Vitis vinifera |
transcript | Vv13s0067g03210.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATTTCAGGGCCTTTGCAAGGGATTTGGAAAAGATATTCTCATCAATTCAG GATTTGGATACAGAAATTATTGTTGCAACAACCAGAGGCCCATCCACAAACEST: gi|110358410|gb|EC922602.1|EC922602
genomic: ATTTCAGGGCCTTTGCAAGGGATTTGGAAAAGATATTCTCATCAATTCAGgcaaggccta ... gttaatgcagGATTTGGATACAGAAATTATTGTTGCAACAACCAGAGGCCCATCCACAAAC
EST: ATTTCAGGGCCTTTGCAAGGGATTTGGAAAAGATATTCTCATCAATTCAG GATTTGGATACAGAAATTATTGTTGCAACAACCAGAGGCCCATCCACAAACEST: gi|27578715|gb|CB001410.1|CB001410
genomic: ATTTCAGGGCCTTTGCAAGGGATTTGGAAAAGATATTCTCATCAATTCAGgcaaggccta ... gttaatgcagGATTTGGATACAGAAATTATTGTTGCAACAACCAGAGGCCCATCCACAAAC
EST: ATTTCAGGGCCTTTGCAAGGGATTTGGAAAAGATATTCTCATCAATTCAG GATTTGGATACAGAAATTATTGTTGCAACAACCAGAGGCCCATCCACAAACEST: gi|110400587|gb|EC967153.1|EC967153
genomic: ATTTCAGGGCCTTTGCAAGGGATTTGGAAAAGATATTCTCATCAATTCAGgcaaggccta ... gttaatgcagGATTTGGATACAGAAATTATTGTTGCAACAACCAGAGGCCCATCCACAAAC
EST: ATTTCAGGGCCTTTGCAAGGGATTTGGAAAAGATATTCTCATCAATTCAG GATTTGGATACAGAAATTATTGTTGCAACAACCAGAGGCCCATCCACAAAC
genomic: ATTTCAGGGCCTTTGCAAGGGATTTGGAAAAGATATTCTCATCAATTCAGgcaaggccta ... gttaatgcagGATTTGGATACAGAAATTATTGTTGCAACAACCAGAGGCCCATCCACAAAC
tcatacagtgtaatgatttttttctgaaatagtggtctcttgaatgttaatgcagGATTTGGATACAGAAATTATTGTTGCAACAACCAGAGGCCCATCCACAAACACAACTGCAGTTGCTGCTAATGTAGTTGTTGATGAGAGGCAGATGAATG
tgttaat putative branch site (score: 3)
taatgatttttttctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaactaatagtgagaagcatacattagcttcttatctgaaaccttcatacagtgtaatgatttttttctgaaatagtggtctcttgaatgttaatgcagGATTTGGATACAGAAATTATTGTTGCAACAACCAGAGGCCCATCCACAAACACAACTGCAGTTGCTGCTAATGTAGTTGTTGATGAGAGGCAGATGAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
-aaactaa
- - - - - - - - -gcataca
- - - - - - - - - - - - - - - - - - - - -accttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatag