Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gctagtcacagtcttcctccactgcttcacttaaaaatgccccattctttagctacatttcaattgtttcttatgtttgcagGTGGAAAGAACTTGAAATCGGGAAATTGGCCATGGGATATGGCTTATTACAGCTCCCTTCAATGCCAGAGGTAAAGCATCACTCGCTGTCCACTGAGGGT

Basic information

species Vitis vinifera
transcript Vv13s0067g01900.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0067g01900.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA11G35640.1 (Glycine max), 3'ss of exon 9
gctagtcacagtcttcctccactgctt-cacttaaaaatgccccattctttagctacatttcaattgtttcttatgtttgcagGTGGAAAGAACTTGAAATCGGGAAATTGGCCATGGGATATGGCTTATTACAGCTCCCTTCAATGCCAGAGGTAAAGCATCACTCGCTGTCCACTGAGGGT
|  |||||     ||       ||||| || || | ||||   ||| | | |    ||    |||| | ||  |   |||||||||||||||||||||||| || |||||||| | ||||| |||||||||||| || ||||||||||| ||||||||||| ||||| || ||||| || || 
gtgagtcat----ttttaatgttgctttcattttataatgaaacat-catcattatcaaactaattatctc--actcttgcagGTGGAAAGAACTTGAAATTGGTAAATTGGCTACGGGATTTGGCTTATTACAACTTCCTTCAATGCCGGAGGTAAAGCACCACTCACTTTCCACGGATGGA

upper sequence: Vv13s0067g01900.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA18G02760.1 (Glycine max), 3'ss of exon 9
gctagtcacagtcttcctccac--tgctt-cacttaaaaatgccccattctttagctacatttcaattgtttcttatgtttgcagGTGGAAAGAACTTGAAATCGGGAAATTGGCCATGGGATATGGCTTATTACAGCTCCCTTCAATGCCAGAGGTAAAGCATCACTCGCTGTCCACTGAGGGT
|  ||| |   |  |     |   || || || || | | ||   | | | | |    ||    |||| || || |   |||||||||||||||||||||||| || ||||||||||  |||| |||||||||||| || |||||||||||||||||||| || ||||| || |||| ||| || 
gtgagtaatgtttatgaataatgttgttttcattttatagtgaaacgt-catcattatcaaactaattatt-ctcactcttgcagGTGGAAAGAACTTGAAATTGGTAAATTGGCCACAGGATTTGGCTTATTACAACTTCCTTCAATGCCAGAGGTAAAACACCACTCACTTTCCATTGATGGA

upper sequence: Vv13s0067g01900.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G71370.1 (Arabidopsis thaliana), 3'ss of exon 6
gctagtcacagtcttcctccactgcttcacttaaaaatgccccattctttagctacatttcaat-tgtttcttatgtttgcagGTGGAAAGAACTTGAAATCGGGAAATTGGCCATGGGATATGGCTTATTACAGCTCCCTTCAATGCCAGAGGTAAAGCATCACTCGCTGTCCACTGAGGGT
    ||  || | |||  |   ||  |   | ||| |||     || | || || ||||    | |    ||||  ||| ||| ||||||| |||||||||||| || || ||||||||||||||| | ||     | ||||  ||  | || || || ||  ||    |   || ||  |||
----gtt-catttttcgcct--tgtgttgttaaaatatgttagcttttgtaactccattcttttgttccccttaaatttacagTTGGAAAGGACTTGAAATCGGAAAGTTAGCCATGGGATATGGCATCTTGTCTTTTCCTTACATATCTGAAGTTAAACAAGACAGAATTGGCATTGTCGGT

upper sequence: Vv13s0067g01900.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G71280.1 (Arabidopsis thaliana), 3'ss of exon 6
gctagtcacagtcttcctccactgcttcacttaaaaatgccccattctttagctacatttcaat-tgtttcttatgtttgcagGTGGAAAGAACTTGAAATCGGGAAATTGGCCATGGGATATGGCTTATTACAGCTCCCTTCAATGCCAGAGGTAAAGCATCACTCGCTGTCCACTGAGGGT
             ||| | |  ||  |  || ||| |||     || | || || ||||    | |    ||||  ||| ||| ||||||| |||||||||||| || || ||||||||||||||| | ||     | ||||  ||  | || || || ||  ||    |   || ||  |||
-------gttcatttctttccttgagttgctaaaatatgttagcttttgtaactccattcttttgttccccttaaatttacagTTGGAAAGGACTTGAAATCGGAAAGTTAGCCATGGGATATGGCATCTTGTCTTTTCCTTACATATCTGAAGTTAAACAAGACAGAATTGGCATTGTCGGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacttaaaaatgccccattctttagctacatttcaattgtttcttatgtttgcagGTGGAAAGAACTTGAAATCGGGAAATTGGCCATGGGATATGGCTTATTACAGCTCCCTTCAATGCCAGAGGTAAAGCATCACTCGCTGTCCACTGAGGGT
                                       tttcttat  CT-rich tract
                             atttcaatt  TA-rich tract