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gtataaaaagaacttcctgaagccatttaagttgctgcttggttggatgatttcttgggtaatggatgttttaagtaattttttgttgtaccttcactggcagGAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCATGATAATGCAGAAGGTAGCTTCTGCTTCTGAGAGGTGATGGATAAGTTTT
species | Vitis vinifera |
transcript | Vv13s0019g05360.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAG GAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCATEST: gi|110696981|gb|EE073568.1|EE073568
genomic: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAGgtataaaaag ... tcactggcagGAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCAT
EST: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAG GAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCATEST: gi|77581507|gb|DV219700.1|DV219700
genomic: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAGgtataaaaag ... tcactggcagGAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCAT
EST: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAG GAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCATEST: gi|71865533|gb|DT014588.1|DT014588
genomic: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAGgtataaaaag ... tcactggcagGAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCAT
EST: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAG GAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCATEST: gi|161713236|gb|FC063668.1|FC063668
genomic: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAGgtataaaaag ... tcactggcagGAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCAT
EST: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAG GAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCATEST: gi|110727604|gb|EE104555.1|EE104555
genomic: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAGgtataaaaag ... tcactggcagGAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCAT
EST: TAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAG GAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCATEST: gi|87586077|gb|DY474538.1|DY474538
genomic: TAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAGgtataaaaag ... tcactggcagGAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCAT
EST: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAG GAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCATEST: gi|110391242|gb|EC956204.1|EC956204
genomic: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAGgtataaaaag ... tcactggcagGAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCAT
EST: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAG GAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCATEST: gi|32460812|gb|CD801986.1|CD801986
genomic: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAGgtataaaaag ... tcactggcagGAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCAT
EST: GATATCTGATAGGGGTGATTTCATGTCCGGGGGACAACTGATAG GAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCATEST: gi|110376153|gb|EC941197.1|EC941197
genomic: GATATCTGATAGGGGTGATTTCATGTCC--GGGACAACTGATAGgtataaaaag ... tcactggcagGAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCAT
EST: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAG GAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCAT
genomic: AGAATAAAGATATCTGATAGGGGTGATTTCATGTCCGGGACAACTGATAGgtataaaaag ... tcactggcagGAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCAT
gatttcttgggtaatggatgttttaagtaattttttgttgtaccttcactggcagGAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCATGATAATGCAGAAGGTAGCTTCTGCTTCTGAGAGGTGATGGATAAGTTTT
ccttcact CT-rich tract
atgttttaagtaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtataaaaagaacttcctgaagccatttaagttgctgcttggttggatgatttcttgggtaatggatgttttaagtaattttttgttgtaccttcactggcagGAAAGTTACAATCACAGGGTCACAGAGAGCAATCCGTGCAGCAGAGTCCATGATAATGCAGAAGGTAGCTTCTGCTTCTGAGAGGTGATGGATAAGTTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA