Sequence
atgc intronic sequence ATGC exonic sequence...gttgaatttgaaactcattattgattttacaatctattttgagtttgattgcttgtaactttactttcattctaagtgattaacggtttttctgtttcagCTTTGCCTTGTTCAAGATGTTTGAAGATTTAGTACTTCTAGCAAAAGGTGGTCTTACTGTGTATCATGGTCCAGTGAAGAAAGTTGAAGAGTACTTTGCT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G32210.1 (Glycine max), 3'ss of exon 10
gttgaatttgaaactcattattgattttacaatctattttgagtttgattgcttgtaactttactttcattctaagtgattaacggtt-----tttctgtttcagCTTTGCCTTGTTCAAGATGTTTGAAGATTTAGTACTTCTAGCAAAAGGTGGTCTTACTGTGTATCATGGTCCAGTGAAGAAAGTTGAAGAGTACTTTGCT
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-ttgtaatcataacttga-atta---taacacttttaattgggattttttaacagtaaaattagttttcctttgatttattaatgattgtaactttctgcttcagCTATGCTTTGTTCAAGATGTTTGATGACCTGATACTTCTGGGAAAAGGTGGTCTTACTGTCTATCATGGATCTGCCAAGAAAGTTGAAGAATACTTTTCA
upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G35310.2 (Glycine max), 3'ss of exon 11
gttgaatttgaaactcattattgattttacaatctattttgagtttgattgcttgtaactttactttcattctaagtgattaacggtt-----tttctgtttcagCTTTGCCTTGTTCAAGATGTTTGAAGATTTAGTACTTCTAGCAAAAGGTGGTCTTACTGTGTATCATGGTCCAGTGAAGAAAGTTGAAGAGTACTTTGCT
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-ttatattcataacttg--aattatatcact-tttaattgggatttg-ttaacagtaaaattagtttccctttaatttattcatgattgtaactttctgcttcagCTATGCTTTGTTCAAGATGTTTGATGACCTGATACTTCTGGGAAAAGGTGGTCTTACTGTCTATCATGGATCTGCCAAGAAAGTTGAAGAATACTTTTCA
upper sequence: Vv13s0019g04600.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G21570.1 (Glycine max), 3'ss of exon 8
gttgaatttgaaactcattattg-attttacaatctattttgagtttgattgcttgtaactttactttcattctaagtgattaacggtttttctgtttc----agCTTTGCCTTGTTCAAGATGTTTGAAGATTTAGTACTTCTAGCAAAAGGTGGTCTTACTGTGTATCATGGTCCAGTGAAGAAAGTTGAAGAGTACTTTGCT
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----aacctgaagattgatctcgtattccatgcattaatttggaattg-tgaacagtatgatttgtttcaatttgatttattaaggatttaaccttttcctgtagCTATGCTTTGGTTCAGATGTTTGATGACTTGATACTCCTGGCAAAAGGTGGTCTTACTGTATATCATGGATCAGTCAAGAAAGTCGAAAAATACTTTGCA atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgattgcttgtaactttactttcattctaagtgattaacggtttttctgtttcagCTTTGCCTTGTTCAAGATGTTTGAAGATTTAGTACTTCTAGCAAAAGGTGGTCTTACTGTGTATCATGGTCCAGTGAAGAAAGTTGAAGAGTACTTTGCT
gattaac putative branch site (score: 2)
tttttctgtttc putative PPT
taacttta TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttgaatttgaaactcattattgattttacaatctattttgagtttgattgcttgtaactttactttcattctaagtgattaacggtttttctgtttcagCTTTGCCTTGTTCAAGATGTTTGAAGATTTAGTACTTCTAGCAAAAGGTGGTCTTACTGTGTATCATGGTCCAGTGAAGAAAGTTGAAGAGTACTTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - aaactca
- - - - - - - - - - - - - - - - - - - - - - - - -tgcttgt