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gtagagaaacttttggtgctttttggttatattttcctccaaaattttaaatttggggtggataactagattgattatttgaattgcaattatatgcatcttatgttgtcattcttccttgatattatttctttgttatttccaactatttatcattggaagttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCACATGGACGAATCAGGACAAGAACTAATCGCTCTGGTGGGATACAG
species | Vitis vinifera |
transcript | Vv13s0019g04190.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACAGATGCACEST: gi|30326726|gb|CD009988.1|CD009988
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCACEST: gi|156737328|gb|EV241442.1|EV241442
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCGCEST: gi|32249612|gb|CD715431.1|CD715431
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCACEST: gi|30131232|gb|CB916571.1|CB916571
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCACEST: gi|32247169|gb|CD712988.1|CD712988
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCACEST: gi|110395213|gb|EC960849.1|EC960849
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCACEST: gi|29783210|gb|CB349240.2|CB349240
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACAGATGCACEST: gi|352776660|gb|FQ465458.1|FQ465458
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCACEST: gi|30325548|gb|CD008810.1|CD008810
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCACEST: gi|110703011|gb|EE079483.1|EE079483
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACAGATGCACEST: gi|32248621|gb|CD714440.1|CD714440
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCACEST: gi|110378991|gb|EC944156.1|EC944156
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCACEST: gi|156737322|gb|EV241443.1|EV241443
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCGCEST: gi|29783264|gb|CB349323.2|CB349323
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACAGATGCACEST: gi|30324763|gb|CD008025.1|CD008025
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
EST: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAG GTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
genomic: TTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaac ... gttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCAC
ccttgatattatttctttgttatttccaactatttatcattggaagttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCACATGGACGAATCAGGACAAGAACTAATCGCTCTGGTGGGATACAG
ccttgat putative branch site (score: 5)
ttcctgc putative PPT
atattatttctttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagagaaacttttggtgctttttggttatattttcctccaaaattttaaatttggggtggataactagattgattatttgaattgcaattatatgcatcttatgttgtcattcttccttgatattatttctttgttatttccaactatttatcattggaagttcctgcagGTACATTTATGACTGGGAGTGAACATAATGATGAGTTCTTCACGGATGCACATGGACGAATCAGGACAAGAACTAATCGCTCTGGTGGGATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG