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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaatcatttgattctttttctttattgtacaaaactatgtttctctatgctaaatgtggttattgtttgttgtcaaaatatattggaaaatctgtttatgacactctcacctttgctagtgattttgttctagGTTTTTGGATTTCGGTTTGCTTTGTCGGATGGAAAAGAAGCATCAATTTGCCATGCTTGCATCCATAGTGCATATTGTAAATGGGGATTGGCCGTCCCTT

Basic information

species Vitis vinifera
transcript Vv13s0019g04130.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04130.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT2G39190.2 (Arabidopsis thaliana), 3'ss of exon 9
gtaaatcatttgattctttttctttattgtacaaaactatgtttctctatgctaaatgtggttattgtttgttgtcaaaatatattg-gaaaatctgtttatgacactctcacctttgctagtgattttgttctagGTTTTTGGATTTCGGTTTGCTTTGTCGGATGGAAAAGAAGCATCAATTTGCCATGCTTGCATCCATAGTGCATATTGTAAATGGGGATTGGCCGTCCCTT
                                        || ||||    | |    |     ||  |    |  ||     | || || ||  || |  | ||    | |||       |||  | | | | ||||||||||| || |||||  ||||||||||| |||  || |||||  |||||||||| ||||| || |||||||| |||||||| |||||| | |  |||
----------------------------------------gtatctcctaaccatccatcagcgttactca--gaaaattctgactgtgacaagatgatcttaacttgataaccac-----gtgtctctatgcaagGTTTTTGGACTTTGGTTTAGTTTGTCGGATGCAAAGAAAACATCAGCTTGCCATGCTCGCATCAATTGTGCATATCGTAAATGGTGATTGGGCCTGTCTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatattggaaaatctgtttatgacactctcacctttgctagtgattttgttctagGTTTTTGGATTTCGGTTTGCTTTGTCGGATGGAAAAGAAGCATCAATTTGCCATGCTTGCATCCATAGTGCATATTGTAAATGGGGATTGGCCGTCCCTT
                         ctctcac  putative branch site (score: 3)
                                            ttttgttct  putative PPT
                                           attttgtt  TA-rich tract