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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttaatcctcgtaccattctttggtagctagttacagttggtcgtgactttaaggccatgagaccgagaaattttctgttgtttttgggcagGGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATT

Basic information

species Vitis vinifera
transcript Vv13s0019g04070.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G07100.1 (Glycine max), 3'ss of exon 8
--gtaagct--taatc-ctcgtaccattctttggtagctagttacagttggtcgtgacttta-aggccatgagaccgagaaattttctgttgtttttgggcagGGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATT
   | | |    |||| |  | | | |  ||  | ||  || || |     |  ||| |||| ||   ||  |      ||  |||| ||| | | | | |||||||||||||||| | |||||||||||||||||| ||||||
ttctgaaccagcaatctcaagcagcttatttgagcagaaagatagaa---attttgaatttatagtttatttgtagtttaacctttcggttctatgttgacagGGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATT

upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G26090.1 (Glycine max), 3'ss of exon 10
gtaagcttaatcctcgtaccattctttggtagctagttacagttggtcgtgactt---taaggccatgagaccgag---aaattttctgttgtttttgggcagGGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATT
       ||      | | | |  ||  | ||  || || |  |  |   |  ||   | |  | |  |     ||   ||  |||  ||| | | |||  ||||||||||||||| | |||||||||||||||||| ||||||
---caactatcttaagaagcttatttgaggagaaagatataaattctgaagttttattttatcctactacttgtagtttaaccttttggttctatgtggatagGGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATT

upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G35640.1 (Glycine max), 3'ss of exon 9
gtaagcttaatcctcgtaccattctttggtagcta-gttacagt-tggtcgtgactttaaggccatgagaccga-gaaattttctgttgtttttgggcagGGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATT
 ||   ||||     | |      |    |||  |  ||| | | || || |   ||  |    ||   |   | || | ||| |||| | | |||||||||||||||||||| |||||| ||||||| |||||  |||||
atagtattaaaatcagaatgcccttagactagaaacattatactatgctcttatattctactttatttcataaatgataatttttgttctatatgggcagGGTGGTATTCTTATTTTTGGATTCCATTTATCCCAGTAATT

upper sequence: Vv13s0019g04070.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA16G26100.2 (Glycine max), 3'ss of exon 10
-gtaagcttaatcctcgtacc-attctttggtagctagttacagttggtcgtgactttaaggccatgagaccgag---aaattttctgttgtttttgggcagGGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATT
 | ||  | |  |  | ||   || |          | ||  |    ||      ||  |  |||  |  |  ||   ||||||| |||| | | ||| ||||||||||||| || | |||||||||||||||||| ||| ||
agcaatataatgcaacttatttatgcagaaaatataaattctaaaatgttccagttt--atcccactaatcttagtttaaattttttgttctatgtggacagGGTGGTATTCCTATTATTGGCTTCCATTCATCCCATTAGTT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtcgtgactttaaggccatgagaccgagaaattttctgttgtttttgggcagGGTGGTATTCTTACTTTTGGCTTCCATTCATCCCCTTAATT
                                  ttttctgttgttttt  CT-rich tract
                             agaaatttt  TA-rich tract