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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttaatcctcataccattctttggtagctagctagttacagttggtaacgactttgaggccacgagactgagaaattttcttttgtttttgggcagGGTGGTATTCTTACTTGTGGCTTCCATTCATCCCCTTAGTT

Basic information

species Vitis vinifera
transcript Vv13s0019g04060.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv13s0019g04060.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA02G07100.1 (Glycine max), 3'ss of exon 8
gtaagcttaatcctca--taccattctttggtagctagctagttacagttggtaacgactttgaggccacgagac-tgagaaattt--tcttttgtttttg----ggcagGGTGGTATTCTTACTTGTGGCTTCCATTCATCCCCTTAGTT
          | || |   | || |||   | ||||   | |        | ||   | |||||    |       |  | | |||   |||| | || |     | |||||||||||||||| |  ||||||||||||||||| ||| ||
----------ttctgaaccagcaatctcaagcagcttatttgagcagaaagatagaaattttgaatttatagtttatttgtagtttaacctttcggttctatgttgacagGGTGGTATTCTTATTATTGGCTTCCATTCATCCCATTAATT

upper sequence: Vv13s0019g04060.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G35640.1 (Glycine max), 3'ss of exon 9
gtaagcttaatcctcataccattctttggtagctagctagttacagt-tggtaacgactttgaggccacgagactga-gaaattttcttttgtttttgggcagGGTGGTATTCTTACTTGTGGCTTCCATTCATCCCCTTAGTT
 ||   ||||   ||| |     ||| |      | |   ||| | | || |      ||  |    |    |   | || | ||| | || | | |||||||||||||||||||| || ||| ||||||| |||||  || ||
atagtattaaaa-tcagaatgcccttagactagaaac--attatactatgctcttatattctactttatttcataaatgataatttttgttctatatgggcagGGTGGTATTCTTATTTTTGGATTCCATTTATCCCAGTAATT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggtaacgactttgaggccacgagactgagaaattttcttttgtttttgggcagGGTGGTATTCTTACTTGTGGCTTCCATTCATCCCCTTAGTT
 tggtaac  putative branch site (score: 2)
                                  ttttcttttgttttt  putative PPT
                               aaattttcttttgttt  TA-rich tract