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...tcatattcactgatgtttagaattttgatgtctagattctagatacagattattactgaagtaccatgttttcttgacgtttgcttctgttttgttacagCCGATGGAAAAATGTTCTCCTGGGGATGGAACAAGTATGGTCAG
species | Vitis vinifera |
transcript | Vv13s0019g02280.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ACATGCAAAAATAGTATCTTGTGGTGCTCGGCACAGTGCTATAATAACAG CCGATGGAAAAATGTTCTCCTGGGGATGGAACAAGTATGGTCAGEST: gi|110381714|gb|EC935198.1|EC935198
genomic: ACATGCAAAAATAGTATCTTGTGGTGCTCGGCACAGTGCTATAATAACAGgtctgtcttc ... tttgttacagCCGATGGAAAAATGTTCTCCTGGGGATGGAACAAGTATGGTCAG
EST: ACATGCAAAAATAGTATCTTGTGGTGCTCGGCACAGTGCTATAATAACAG CCGATGGAAAAATGTTCTCCTGGGGATGGAACAAGTATGGTCAG
genomic: ACATGCAAAAATAGTATCTTGTGGTGCTCGGCACAGTGCTATAATAACAGgtctgtcttc ... tttgttacagCCGATGGAAAAATGTTCTCCTGGGGATGGAACAAGTATGGTCAG
cagattattactgaagtaccatgttttcttgacgtttgcttctgttttgttacagCCGATGGAAAAATGTTCTCCTGGGGATGGAACAAGTATGGTCAG
tcttgac putative branch site (score: 3)
tttgcttctgtttt CT-rich tract
ttttgtta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcatattcactgatgtttagaattttgatgtctagattctagatacagattattactgaagtaccatgttttcttgacgtttgcttctgttttgttacagCCGATGGAAAAATGTTCTCCTGGGGATGGAACAAGTATGGTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- -tattcac
- - - - - - - - - - - - -tgatgtc
- - - - - - - - - - - - - - - - - - - - - atacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcttct