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...gttgtttttatataaatagataacctagcttatggatgtctatgtgcatagataaatttatggttgatgccacatgatgtgcatttgcatttgtgtgcagGATAAATGGAAAACACTGGTTCACACGGCAAGAATCTCCCCTCAGCAAAGAAGGGGAGAACCCGTGCCCCAGGAGGTCTTGGACAGAGTCCTGTCTGCCC
species | Vitis vinifera |
transcript | Vv13s0019g01670.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AACTGCGTGCTTTTGATAATGCAAAACATCGAACTTATGTAGATTTGAAG GATAAATGGAAAACACTGGTTCACACGGCAAGAATCTCCCCTCAGCAAAGAEST: gi|26266564|gb|CA817627.1|CA817627
genomic: AACTGCGTGCTTTTGATAATGCAAAACATCGAACTTATGTAGATTTGAAGgtgaggaatc ... ttgtgtgcagGATAAATGGAAAACACTGGTTCACACGGCAAGAATCTCCCCTCAGCAAAGA
EST: AACTGCGTGCTTTTGATAATGCAAAACATCGAACTTATGTAGATTTGAAG GATAAATGGAAAACACTGGTTCACACGGCAAGAATCTCCCCTCAGCAAAGAEST: gi|26264539|gb|CA815602.1|CA815602
genomic: AACTGCGTGCTTTTGATAATGCAAAACATCGAACTTATGTAGATTTGAAGgtgaggaatc ... ttgtgtgcagGATAAATGGAAAACACTGGTTCACACGGCAAGAATCTCCCCTCAGCAAAGA
EST: AACTGCGTGCTTTTGATAATGCAAAACATCGAACTTATGTAGATTTGAAG GATAAATGGAAAACACTGGTTCACACGGCAAGAATCTCCCCTCAGCAAAGA
genomic: AACTGCGTGCTTTTGATAATGCAAAACATCGAACTTATGTAGATTTGAAGgtgaggaatc ... ttgtgtgcagGATAAATGGAAAACACTGGTTCACACGGCAAGAATCTCCCCTCAGCAAAGA
gcatagataaatttatggttgatgccacatgatgtgcatttgcatttgtgtgcagGATAAATGGAAAACACTGGTTCACACGGCAAGAATCTCCCCTCAGCAAAGAAGGGGAGAACCCGTGCCCCAGGAGGTCTTGGACAGAGTCCTGTCTGCCC
ggttgat putative branch site (score: 5)
ataaatttatggtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgtttttatataaatagataacctagcttatggatgtctatgtgcatagataaatttatggttgatgccacatgatgtgcatttgcatttgtgtgcagGATAAATGGAAAACACTGGTTCACACGGCAAGAATCTCCCCTCAGCAAAGAAGGGGAGAACCCGTGCCCCAGGAGGTCTTGGACAGAGTCCTGTCTGCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - -aaataga
- - - - - - - - - - - - - -gcttatg
- - - - - - - - - - - - - - - - - - - - tatgtgc
- - - - - - - - - - - - - - - - - - - - - - - - -agataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggttga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gccacat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catttgc