1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...aagcctaccaaaagaagcacgtccttgaatggagtgagatgagttgattctttttttaatttggttgcaacaatttccttatgcttggccatccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG
species | Vitis vinifera |
transcript | Vv13s0019g00840.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110699424|gb|EE076409.1|EE076409
genomic: TATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|30132964|gb|CB918303.1|CB918303
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|33410540|gb|CF216167.1|CF216167
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|71882833|gb|DT031888.1|DT031888
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|30303799|gb|CB980593.1|CB980593
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110690502|gb|EE067657.1|EE067657
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110702160|gb|EE080556.1|EE080556
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGGTGA-TCCTTGACTGTTCAAGCTCCTGGAA-ACAAACTCNGAGTTTTTEST: gi|22012135|gb|BQ797169.1|BQ797169
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGG-TGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTT
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|156736486|gb|EV240607.1|EV240607
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110361965|gb|EC925471.1|EC925471
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110359526|gb|EC921159.1|EC921159
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|27583335|gb|CB006030.1|CB006030
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110694959|gb|EE072432.1|EE072432
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110369469|gb|EC933629.1|EC933629
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110357315|gb|EC920771.1|EC920771
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTEST: gi|30132893|gb|CB918232.1|CB918232
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCT
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|30303733|gb|CB980527.1|CB980527
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110723312|gb|EE100478.1|EE100478
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: TGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110720753|gb|EE096961.1|EE096961
genomic: TGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110714087|gb|EE090592.1|EE090592
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: ATATTGATGACNGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAAC-CAAACTCGGGAGTTTTTEST: gi|110721136|gb|EE097790.1|EE097790
genomic: ATATTGATGAC-GGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGG-AGTTTTT
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110719051|gb|EE096588.1|EE096588
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110687991|gb|EE066031.1|EE066031
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110373757|gb|EC938084.1|EC938084
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|83275690|gb|DV939698.1|DV939698
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110732601|gb|EE108029.1|EE108029
genomic: AGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|33407947|gb|CF213574.1|CF213574
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|33408479|gb|CF214106.1|CF214106
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|71862913|gb|DT011968.1|DT011968
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|32246001|gb|CD711820.1|CD711820
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110696154|gb|EE074987.1|EE074987
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110360290|gb|EC923209.1|EC923209
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|110356627|gb|EC919593.1|EC919593
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGEST: gi|30299440|gb|CB976234.1|CB976234
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
EST: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCG TGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
genomic: AATATTGATGACGGGCGTGTTGTCAGCAATTTCATTGCTCAAGCAATTCGgtaatcttta ... atccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTG
gattctttttttaatttggttgcaacaatttccttatgcttggccatccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG
ttttaat putative branch site (score: 3)
tttttttaatttggtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aagcctaccaaaagaagcacgtccttgaatggagtgagatgagttgattctttttttaatttggttgcaacaatttccttatgcttggccatccatgcagTGGTGAATCCTTGACTGTTCAAGCTCCTGGAACACAAACTCGGAGTTTTTGTTACGTGTCTGACATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- gcctacc
- - - - -aaaagaa
- - - - - - - - -cacgtcc
- - - - - - - - - - - - -tgaatgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcaacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cttatgc