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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagaaaaatctgtaaatgtccttatgaaataattgtgacaccagtaagttttcagcccagatgccaaattctttgatgatttatgccttctattttcctttcagGTACACCTCAAAGATGTTACTGGCTGCTATTGATGAAAATCATAGGGGTACCTATGATTTTCTATACTTGCCAATTGATTTTAAG

Basic information

species Vitis vinifera
transcript Vv12s0142g00100.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|351016374|gb|FQ446234.1|FQ446234
EST:     AGTGGGGAGGATACTAGGACTACTTTAATGATTAAAAACATTCCAAATAA                         GTACACCTCAAAGATGTTACTGGCTGCTATTGATGAAAATCATAGGGGTAC
genomic: AGTGGGGAGGATACTAGGACTACTTTAATGATTAAAAACATTCCAAATAAgtaagaaaaa ... ttcctttcagGTACACCTCAAAGATGTTACTGGCTGCTATTGATGAAAATCATAGGGGTAC
EST: gi|351017816|gb|FQ436169.1|FQ436169
EST:     AGTGGGGAGGATACTAGGACTACTTTAATGATTAAAAACATTCCAAATAA                         GTACACCTCAAAGATGTTACTGGCTGCTATTGATGAAAATCATAGGGGTAC
genomic: AGTGGGGAGGATACTAGGACTACTTTAATGATTAAAAACATTCCAAATAAgtaagaaaaa ... ttcctttcagGTACACCTCAAAGATGTTACTGGCTGCTATTGATGAAAATCATAGGGGTAC
EST: gi|34544132|gb|CF512364.1|CF512364
EST:     AGTGGGAAGGATACTAGGACTACTTTAATGATTAAAAACATTCCAAATAA                         GTACACCTCAAAGATGTTACTGGCTGCTATTGATGAAAATCATAGGGGTAC
genomic: AGTGGGGAGGATACTAGGACTACTTTAATGATTAAAAACATTCCAAATAAgtaagaaaaa ... ttcctttcagGTACACCTCAAAGATGTTACTGGCTGCTATTGATGAAAATCATAGGGGTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttcagcccagatgccaaattctttgatgatttatgccttctattttcctttcagGTACACCTCAAAGATGTTACTGGCTGCTATTGATGAAAATCATAGGGGTACCTATGATTTTCTATACTTGCCAATTGATTTTAAG
                     ctttgat  putative branch site (score: 5)
                              tttatgccttctattt  putative PPT
                aaattcttt  TA-rich tract