Sequence
atgc intronic sequence ATGC exonic sequencegtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcctcttccactttttatggttattttgtacatgattattgcagGCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCACTGGGTTCTTGGTTTATTGGTCTTGATGCGGAACATATTGATGATCGGAGATTATGTTGTGGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os03g38050.1 (Oryza sativa), 3'ss of exon 9
gtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcctcttcc--actttttatggttatt--ttgtacatgat-----tattgcagGCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCACTGGGTTCTTGGTTTATTGGTCTTGATGCGGAACATATTGATGATCGGAGATTATGTTGTGGC
||| | || | | | ||| ||||| || |||||||| | | | || | | | ||| | ||||| | || |||||||||||| ||||| |||||||||||||| || ||| | || | ||||| || ||||| || | ||||| | |||||||| || | || || ||
---------------------gtaagaaatttcttcagatttggtttttctttg--ttgat-tacaccataatatgttttatctaacctctacccatcattgaccatggatgatggtgatgtttcagGCATGTTCTCCACAAATATGCTAATGAGGATGTATCATTAGGAGCATGGTTCATAGGTCTAGACGTCGAACACGTCGATGATCGCAGGCTTTGCTGCGGT
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G10520.1 (Glycine max), 3'ss of exon 9
gtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatt-tcataatatcctcttccactttttatggttattttgtacatgattattgcagGCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCACTGGGTTCTTGGTTTATTGGTCTTGATGCGGAACATATTGATGATCGGAGATTATGTTGTGGC
| | | | | | || ||| ||||| ||| || | | | || | ||| | | |||| ||| | | || ||| || || || |||| ||||||||||||||||||| || ||||| || ||||| || || ||||||||||| ||||||| ||| ||||| |||||||| ||| | |||||||||
------ctggagtgagtggaattcacctttataaattaaatca---aatcaatgaactaaaaggttcttatattgtgctct--caccctgtgtgtatatgtt--------ttctttcagGAATGTTCTTCACAAGTATGCCAACGAGGATGTGTCACTAGGATCCTGGTTTATTGGACTTGATGTGGAGCATATAGATGATCGAAGACTTTGTTGTGGC
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA06G46230.2 (Glycine max), 3'ss of exon 9
--gtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcctcttccactttttatggttattttgtacatgattattgcagGCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCACTGGGTTCTTGGTTTATTGGTCTTGATGCGGAACATATTGATGATCGGAGATTATGTTGTGGC
|| || | | || || || | |||| | ||||| || | | || | ||| | | |||| ||| | | || | || | || || |||| ||||||||||||||||||| || ||||| || ||||| || || ||||||||||| ||||||| ||| ||||| |||||||| ||| | |||||||||
gagtgtgtgtgtaatt--cacctttgtaagttaaatca--aatcaatgaactaaaaggtt-------cttatattgtgctct--caccctgtgtg-------tatatgtttttctttcagGAATGTTCTTCACAAGTATGCCAACGAGGATGTGTCACTAGGATCCTGGTTTATTGGACTTGATGTGGAGCATATAGATGATCGAAGACTTTGTTGTGGC
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G38500.1 (Glycine max), 3'ss of exon 9
gtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatt--tcataatatcctcttccactttttatggttattt-tgtacatgattattgcagGCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCACTGGGTTCTTGGTTTATTGGTCTTGATGCGGAACATATTGATGATCGGAGATTATGTTGTGGC
|| ||| | | | || || || |||| | | | |||||| |||| | | | | | ||| | | ||||| | | || |||||| |||| | || | |||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||||||||| ||||||| | | || || |||||||| ||| | || |||||
gtgagtgctt-catctcacttgtggggaaaaaaacaattaaaatcaaatttatggactaaaatggtggtagaaatgttgtgatccacatgat-tgcttatttgtgtatttctttgtctcagGCACGTTCTCCACAAGTATGCCAATGAGGATGTCTCACTAGGTTCTTGGTTTATTGGACTTGATGTGAATCACATAGATGATCGAAGACTCTGCTGTGGT
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA12G31980.1 (Glycine max), 3'ss of exon 9
gtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatt--tcataatatcctcttccactttttatggttattttgtacatgattattgcagGCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCACTGGGTTCTTGGTTTATTGGTCTTGATGCGGAACATATTGATGATCGGAGATTATGTTGTGGC
|| ||| | | | || || ||| ||| | | | | ||| |||| | | | | | ||||| | ||||| | | | ||||| || | | || | |||||| ||||| ||||||||||| |||||||| || ||||| ||||||||||||||||| || |||| ||| || || |||||||| ||| | || |||||
gtgagtgctt-catctcacttgtgggggaaaaagcaattaaaataacatttatggactaaaatggtggtgcaaatattgtgatccacatgatg-gcttattgtgcatgtctttgtctcagGCACGTTCTCCACAAGTATGCCAATGAGGATGTCTCACTAGGTTCTTGGTTTATTGGACTAGATGTGGACCACATAGATGATCGAAGACTCTGCTGTGGT
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT2G32430.1 (Arabidopsis thaliana), 3'ss of exon 9
gtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcc-tcttccactttttatggttattttgtacatgattattgcagGCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCACTGGGTTCTTGGTTTATTGGTCTTGATGCGGAACATATTGATGATCGGAGATTATGTTGTGGC
| || | ||| | | | | | | | || | || | | || || | | | | || |||||||||||| ||||| ||||| |||||||| ||| || | ||| |||||||||| || ||||||| | |||||| |||||| | ||| |||||||||||
-------------------------------------------gtaagat-ttgaactcctttgtaccgcatcatttatgcctcattctccatctaacttctcttacaaaatgttccagGCATGTTCTGCACAAATATGCAAATGAGGATGTTACATTAGGTGCTTGGTTTATCGGGCTTGATGTGACACATATCGATGATAGAAGACTATGTTGTGGC
upper sequence: Vv12s0059g00640.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G05170.2 (Arabidopsis thaliana), 3'ss of exon 9
gtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcctcttccactttttatggttattttgtacatgattattgcagGCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCACTGGGTTCTTGGTTTATTGGTCTTGATGCGGAACATATTGATGATCGGAGATTATGTTGTGGC
|||| | || || | | | | | | || | | || | | ||| || | |||| | | | | || |||||||||||||||||||||||| || || || ||||| || || |||||||||| || |||||| |||| ||||||||| | |||||||| || ||
----------------------------gtaagatgaagatgag--attacattgtatcatagctcatttgttaactcatgtaactcttcgttcttatac-atgt-taaatgtttcagGCATGTTCTTCACAAGTATGCGAACGAAGATGTTTCGCTAGGAGCTTGGTTTATCGGGATTGATGTTAAACACATTGATGATAGAAGATTATGCTGCGGAMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|30137885|gb|CB923223.1|CB923223EST: CAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCA GCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCAC
genomic: CAGCTATATGCCATTTCAAAAGATTTGGCTAGATATATATCAATAAACCAgtaagttttc ... attattgcagGCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCAC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.atttcataatatcctcttccactttttatggttattttgtacatgattattgcagGCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCACTGGGTTCTTGGTTTATTGGTCTTGATGCGGAACATATTGATGATCGGAGATTATGTTGTGGC
tttttatggttatttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagttttcacttaccattttcaaggggtaaaaaaggaatcagcaaattcttggattgatgtatttcataatatcctcttccactttttatggttattttgtacatgattattgcagGCATGTTCTTCACAAGTATGCTAATGAGGACGTTTCACTGGGTTCTTGGTTTATTGGTCTTGATGCGGAACATATTGATGATCGGAGATTATGTTGTGGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT