1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catgcttacacaagctaaaaacacatacacctatgcttctttgtgtttataatggattctaacgctaacgacatgggcatttcgtaatccacccttgcagATTTTGGTCGGGGAATCAATTGTCAAACAGAAGGACCCCAGGAGTGGCATAACTGGACTTTTCGGTAAAGATATCTCTGTATGAGTTCAAGAGAGCCTCC
species | Vitis vinifera |
transcript | Vv12s0057g01240.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGTTTACTCCTGCAGATGTTGCTTATGTACAAGAAGCTGGTGTTAAAGCA ATTTTGGTCGGGGAATCAATTGTCAAACAGAAGGACCCCAGGAGTGGCATAEST: gi|110691072|gb|EE068758.1|EE068758
genomic: TGTTCACTCCTGCTGATGTTGCTTATGTACAAGAAGCTGGTGTTAAAGCAgtaagtttct ... acccttgcagATTTTGGTCGGGGAATCAATTGTCAAACAGAAGGACCCCAGGAGTGGCATA
EST: TGTTCACTCCTGCTGATGTTGCTTATGTACAAGAAGCTGGTGTTAAAGCA ATTTTGGTCGGGGAATCAATTGTCAAACAGAAGGACCCCAGGAGTGGCATA
genomic: TGTTCACTCCTGCTGATGTTGCTTATGTACAAGAAGCTGGTGTTAAAGCAgtaagtttct ... acccttgcagATTTTGGTCGGGGAATCAATTGTCAAACAGAAGGACCCCAGGAGTGGCATA
tttataatggattctaacgctaacgacatgggcatttcgtaatccacccttgcagATTTTGGTCGGGGAATCAATTGTCAAACAGAAGGACCCCAGGAGTGGCATAACTGGACTTTTCGGTAAAGATATCTCTGTATGAGTTCAAGAGAGCCTCC
tccaccctt CT-rich tract
attctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgcttacacaagctaaaaacacatacacctatgcttctttgtgtttataatggattctaacgctaacgacatgggcatttcgtaatccacccttgcagATTTTGGTCGGGGAATCAATTGTCAAACAGAAGGACCCCAGGAGTGGCATAACTGGACTTTTCGGTAAAGATATCTCTGTATGAGTTCAAGAGAGCCTCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
catgctt
- - - - cacaagc
- - - - - - - - aaaaaca
- - - - - - - - - - - -catacac
- - - - - - - - - - - - - - - ctatgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgggc