1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...gacctttttttttttcttccatatcaagctggcaaattgccgacttttttgggctagaacatccctttgtttgtctgactctatttggtctgattttcagGCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGATGGATCGATATTTGCATATTCG
species | Vitis vinifera |
transcript | Vv12s0055g00900.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAG GCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGATEST: gi|110386126|gb|EC950701.1|EC950701
genomic: CTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaatctcaa ... tgattttcagGCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGAT
EST: CTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAG GCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGATEST: gi|30329697|gb|CD012959.1|CD012959
genomic: CTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaatctcaa ... tgattttcagGCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGAT
EST: CTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAG GCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGAT
genomic: CTGACGGTGCTTTTAATTTCTGGGACAAGGATAGTAAACAGAGACTCAAGgtaatctcaa ... tgattttcagGCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGAT
tttttgggctagaacatccctttgtttgtctgactctatttggtctgattttcagGCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGATGGATCGATATTTGCATATTCG
ttttc CT-rich tract
tttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gacctttttttttttcttccatatcaagctggcaaattgccgacttttttgggctagaacatccctttgtttgtctgactctatttggtctgattttcagGCTATGTCAAGGTGCAGTCAACCTATACCTTGCAGTACTTTCAACAATGATGGATCGATATTTGCATATTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - -cttccat
- - - - - - - - - - - - - -gctggca
- - - - - - - - - - - - - - - - - aattgcc
- - - - - - - - - - - - - - - - - - - - - - - - - gggctag