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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacttattactatcacacggagcattatccaatattccatatagattggagcttatgaacagacatcttttccatgcagATCAACAACCAGTCAATTCAAGACATGCACATATTTGGAGATCCTTCCCGTATTCCTATTATAATTGTAGAACGTGTTGTGAATGTGCCACGGCGTACTA

Basic information

species Vitis vinifera
transcript Vv12s0055g00430.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G19570.1 (Glycine max), 3'ss of exon 11
----gtgacttattact--atcacacggagcatta-tccaatattccatatagattggagcttatgaacagacatcttttccatgcagATCAACAACCAGTCAATTCAAGACATGCACATATTTGGAGATCCTTCCCGTATTCCTATTATAATTGTAGAACGTGTTGTGAATGTGCCACGGCGTACTA
    ||   |  |||||  ||       |  || | |    | || | |   |||| |   || |   || |||  ||  |||||||||||||||| | |||| ||||||||||| | ||||||||||||||||  ||| |||||||||| ||||| |||||  | |  ||  ||   ||   | | |
gtatgtagttgtttactgaatgtttataattataacttttgtttttcctgctgatttgtattttttgtcatacaaatt--ccatgcagATCAACAATCGGTCACTTCAAGACATGTATATATTTGGAGATCCTTTGCGTGTTCCTATTATTATTGTTGAACGCTTGGAAAACATGTACCGTTCTGCCA

upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G05480.1 (Glycine max), 3'ss of exon 13
------gtgacttattactatcacacggagcattat----ccaatattccatatagattggagcttatgaacagacatcttttccatgcagATCAACAACCAGTCAATTCAAGACATGCACATATTTGGAGATCCTTCCCGTATTCCTATTATAATTGTAGAACGTGTTGTGAATGTGCCACGGCGTACTA
      ||   |||    |   |  |  |  |||||        | || | |   |||| |   || |   || |||  ||  || ||||||||||| ||| |||| |||| |||||| | ||||||||||||||||  ||| |||||||||| ||||||||| |  | |  ||  |||  ||   | | |
gtaatagttgtttacatatggaatgcttataattataacttttgtttttcttgctgatttgtattttttgtcatacaaatt--ccgtgcagATCAACGACCGGTCACTTCAGGACATGTATATATTTGGAGATCCTTTGCGTGTTCCTATTATTATTGTAGAATGCTTGGAAAACATGCACCGTTCTGCCA

upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G08190.1 (Glycine max), 3'ss of exon 11
----gtgact-tattactatcacacggagcattatccaatattccatatagattggagcttatgaacagacatcttttccatgcagATCAACAACCAGTCAATTCAAGACATGCACATATTTGGAGATCCTTCCCGTATTCCTATTATAATTGTAGAACGTGTTGTGAATGTGCCACGGCGTACTA
    |||| | ||||  | |     |     | |||  ||| |       || |||   |||||| || |  |   |  ||||||||||||||| | |||| ||||||| ||| | |||||||||||||||   |   |||||||||| |||||||||||  |    || |||   |    | | |
gtaagtgattgtatttttctggagtgctttgtaatcttatagttttggctgactgggatttatga-catatgtgaatctcatgcagATCAACAATCGGTCACTTCAAGATATGTATATATTTGGAGATCCTCTGCTGGTTCCTATTATTATTGTAGAACGCTTGACAAACGTGTACCATTCTGCCA

upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G58350.1 (Arabidopsis thaliana), 3'ss of exon 10
-gtgacttattactatcacacggagcattatccaatattccatatagattggagctta--tgaacagacatcttttccatgcagATCAACAACCAGTCAATTCAAGACATGCACATATTTGGAGATCCTTCCCGTATTCCTATTATAATTGTAGAACGTGTTGTGAATGTGCCACGGCGTACTA
  |   |  |  || |   |   ||     |    |  |      |  |   || |||  ||  ||      || |   ||||||| |||||||  ||||| ||||||||||| ||| |||||||||||   ||  |||||||| | ||  | ||||||||  ||||||  ||| | || ||| 
gtttgttcttctctttttgatttagttccctttcttggttttatcaactcttagtttatttggtcaatacatttgttggtgcagATTAACAACCGTTCAATACAAGACATGCATATACTTGGAGATCCTATGCGGGTTCCTATTGTTATCATTGAACGTGTCTTGAATGCACCAAGACGCACTT

upper sequence: Vv12s0055g00430.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G09980.1 (Arabidopsis thaliana), 3'ss of exon 10
gtgacttattactatcacacggagcattatccaatattccatatagattggagcttatgaacagacatcttttccatgcagATCAACAACCAGTCAATTCAAGACATGCACATATTTGGAGATCCTTCCCGTATTCCTATTATAATTGTAGAACGTGTTGTGAATGTGCCACGGCGTACTA
||   |||||    |  |  |   || |  ||  |        ||  ||| |   | |||      ||   |    ||||||| ||||||| | |||| ||||||||||| |||||||| ||||||   ||  |||||||  | ||  | |||||||||  |||||  ||| |||||||  
gtttgttattttagtttcgtgattcaattacctgttcgtttcgtaagttgtacaatttgattgattataactaatgtgcagATAAACAACCGGGCAATACAAGACATGCATATATTTGGTGATCCTATGCGGGTTCCTATAGTTATAATTGAACGTGTTTGGAATGCACCAAGGCGTACGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttatccaatattccatatagattggagcttatgaacagacatcttttccatgcagATCAACAACCAGTCAATTCAAGACATGCACATATTTGGAGATCCTTCCCGTATTCCTATTATAATTGTAGAACGTGTTGTGAATGTGCCACGGCGTACTA
                                       catcttttcc  CT-rich tract
              atatagatt  TA-rich tract