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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtccaaaagtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgcatagtgttgaagcaactgtgaccatttcctgcttctttgcagGATCTTAG

Basic information

species Vitis vinifera
transcript Vv12s0055g00360.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0055g00360.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G19640.2 (Glycine max), 3'ss of exon 8
-------------------------------------------------------------------------------------------------------------------------gtccaaaagtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgcat---agtgttgaagcaactgtgaccatttcctgcttctttgcagGATCTTAG
                                                                                                                         ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||   ||||||||||||||| |||                             
gtttgcccttttcaactgtaagctaatgggcctgagtctatagctagtcccttcaagaactggacatctattatatctgatatcaaataatgctatgctctgcagGTTATTTTTAATTTTGGTCCAAAAGTGTCCATATTCACA-TTTTATTCAGACGAAGATAAGTTTCTGTTCATGTGAATTGTAGTGTTGAAGCAACT-TGATG---------------------------

upper sequence: Vv12s0055g00360.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G05410.4 (Glycine max), 3'ss of exon 8
----------------------------------------------------------------------------------------------------------------------------gtccaaaagtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgcat---agtgttgaagcaactgtgaccatttcctgcttctttgcagGATCTTAG
                                                                                                                            ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| ||   ||||| ||||||||| |||                             
gtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgctctgcagGTTATTTTTAATTTTGGTCCAAAAGTGTCCATATTCACA-TTTTATTCAGACGAAGATAAGTTTCTGTTCATGTGAATTGTAGTGTCGAAGCAACT-TGATG---------------------------

upper sequence: Vv12s0055g00360.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G05410.5 (Glycine max), 3'ss of exon 8
----------------------------------------------------------------------------------------------------------------------------gtccaaaagtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgca---tagtgttgaagcaact--gtgacca----tttcctgcttctttgcagGATCTTAG
                                                                                                                            ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |   |||||| |||||||||   ||||      |||||||||  || ||||||| ||||
gtttgcccttttcaactgtaaactaataatgggcatgagtctatagctagtcccttcaagaactggaaatctattatatctgatatcaaataatgctctgctctgcaggttatttttaattttggtccaaaagtgtccatattcaca-ttttattcagacgaagataagtttctgttcatgtgaattgtagTGTCGAAGCAACTTGATGACTGGATGTTTCCTGCTAATT-GCAGGATTTTAG

upper sequence: Vv12s0055g00360.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G15200.2 (Arabidopsis thaliana), 3'ss of exon 9
-------------------------------gtccaaaa-gtgtccatattcacaattttattgagacgaagataagtttctgttcatgtgcata--------gtgtt-gaagcaactg-tgaccatttcctgcttctttgcagGATCTTAG--------------------------------------------------------------------------------------------------------------------------------
                               |||||||| |||| |||||| |||||||||| ||| | ||||||||||||  |||| |||||||         |||| |  || |  | |    |||    |||  | |  ||| |  |                                                                                                                                  
gtatttcatttgcaggttattttttatttcggtccaaaaagtgtgcatattgacaattttatagaggcaaagataagtttccattcacgtgcatacaaaggcaatgtttggtgctataggtagaaattggtagctgatataaaggtttctgtcaaaacttatttaatttgatttgcatgtggacgggtgtttcagGACTAAAGCAGAGCCACGGATATACTATGCACCAGTGAAGCCTTTGGAAGAAGATACAAGTGAGGTAGAACAACAGAAAGAGCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctgttcatgtgcatagtgttgaagcaactgtgaccatttcctgcttctttgcagGATCTTAG
                                  ccatttcctgcttctt  CT-rich tract