1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtagtgccatttctttaatatttgttgttaacagaccaaagattgctttacagtgacaagagtttgaaaaattcataactttcattacttattttacaagGCGACAAGATTCTTCCATTGGATTTGGAGCACCAGTTCGTGCGAACATGAGAACTGGTGGACTAACTGATGCTGTAGTGACATCATCATTATTAGAATCT
species | Vitis vinifera |
transcript | Vv12s0035g01860.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTTATTTGTGGTGGAGCATTTGTTGATTTGGAAAAGACCATTTCAGAAAG GCGACAAGATTCTTCCATTGGATTTGGAGCACCAGTTCGTGCGAACATGAGEST: gi|26267713|gb|CA818776.1|CA818776
genomic: TTTATTTGTGGTGGAGCATTTGTTGATTTGGAAAAGACCATTTCAGAAAGgtagtgccat ... attttacaagGCGACAAGATTCTTCCATTGGATTTGGAGCACCAGTTCGTGCGAACATGAG
EST: TTTATTTGTGGTGGAGCATTTGTTGATTTGGAAAAGACCATTTCAGAAAGG GCGACAAGATTCTTCCATTTGGATTTGGAGCACCAGTTCGTGCGAACATG
genomic: TTTATTTGTGGTGGAGCATTTGTTGATTTGGAAAAGACCATTTCAGAAA-Ggtagtgccat ... attttacaagGCGACAAGATTCTTCCA-TTGGATTTGGAGCACCAGTTCGTGCGAACATG
ctttacagtgacaagagtttgaaaaattcataactttcattacttattttacaagGCGACAAGATTCTTCCATTGGATTTGGAGCACCAGTTCGTGCGAACATGAGAACTGGTGGACTAACTGATGCTGTAGTGACATCATCATTATTAGAATCT
tcataac putative branch site (score: 2)
cttatttt putative PPT
tttgaaaaattcataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagtgccatttctttaatatttgttgttaacagaccaaagattgctttacagtgacaagagtttgaaaaattcataactttcattacttattttacaagGCGACAAGATTCTTCCATTGGATTTGGAGCACCAGTTCGTGCGAACATGAGAACTGGTGGACTAACTGATGCTGTAGTGACATCATCATTATTAGAATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG