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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgttgaataaagataatttgtgataaaatgttaagattatcacttattgtgaacattgcagGTATTCTGTTCTCCCCAAGACAAGAAAGTGTCTGGATGACATTGACAAGTTCATTAGAGAAAATCATTTTGATGAATGTGGAATTATTTATTGTCTTTCA

Basic information

species Vitis vinifera
transcript Vv12s0035g00400.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv12s0035g00400.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G20070.1 (Glycine max), 3'ss of exon 15
gtaagtgttgaataaagat--aatttgtgataaaatgttaa--gatta-tca--cttattgtgaacattgcagGTATTCTGTTCTCCCCAAGACAAGAAAGTGTCTGGATGACATTGACAAGTTCATTAGAGAAAATCATTTTGATGAATGTGGAATTATTTATTGTCTTTCA
    | |||  |  |||||  | ||  |  ||||   | ||  ||| | |||   | ||| | |||||||||||||||||||| |||||||||| | ||||||| |||| ||||||||||| |||||||| |  |||||||||||||||||||| ||||| ||||||||||||
--gtgcgttatacgaagattgacttcttactaaaccttcaatggataaatcatgttcattttcaacattgcagGTATTCTGTTGTCCCCAAGACTAAAAAGTGTTTGGAGGACATTGACAAATTCATTAGGGTGAATCATTTTGATGAATGTGGCATTATCTATTGTCTTTCA

upper sequence: Vv12s0035g00400.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G10930.1 (Arabidopsis thaliana), 3'ss of exon 13
gtaagtgttgaataaagataatttgtgataaaatgttaagattatcacttattgtgaacattgcagGTATTCTGTTCTCCCCAAGACAAGAAAGTGTCTGGATGACATTGACAAGTTCATTAGAGAAAATCATTTTGATGAATGTGGAATTATTTATTGTCTTTCA
||||      | ||   | ||    |    |  | |  ||| |    ||||    |||  |||||||||||||||| | |||||||||| |||||||||||| ||||| ||||| || ||||  ||||| ||||||||||| ||||||||||| ||||||||||||
gtaatctacaactaccta-aacccatat--atgtttccagaatgctgcttaccaagaagtttgcagGTATTCTGTTGTTCCCAAGACAAAAAAGTGTCTGGAAGACATCGACAAATTTATTAAGGAAAACCATTTTGATGAGTGTGGAATTATATATTGTCTTTCA

upper sequence: Vv12s0035g00400.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT1G60930.1 (Arabidopsis thaliana), 3'ss of exon 13
gtaa-gtgttgaataaagataatttgtgataaaatgttaagattatcacttattgtgaacattgcagGTATTCTGTTCTCCCCAAGACAAGAAAGTGTCTGGATGACATTGACAAGTTCATTAGAGAAAATCATTTTGATGAATGTGGAATTATTTATTGTCTTTCA
|||| ||  |||| | || | |   |  ||      || ||| | |  ||||     ||  |||||||||||||||| | ||||||||||  |||||| |||| || ||||||||||| ||  | ||||| ||||||||||||||||| || |||||||||||||||
gtaatgtactgaaaatagcttaaaag-aatgctgctttcagaatgttgcttaccaaaaaatttgcagGTATTCTGTTGTTCCCAAGACAAATAAGTGTTTGGAAGATATTGACAAGTTTATCCGGGAAAACCATTTTGATGAATGTGGCATCATTTATTGTCTTTCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ataaagataatttgtgataaaatgttaagattatcacttattgtgaacattgcagGTATTCTGTTCTCCCCAAGACAAGAAAGTGTCTGGATGACATTGACAAGTTCATTAGAGAAAATCATTTTGATGAATGTGGAATTATTTATTGTCTTTCA
      ataatttgtgataaaa  TA-rich tract