1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...ttatgtttacatattttgatttaatggaaggccaaacaattatatatcctgaaggtaatttgatgatggcatgtactttgtttctttggacattgttcagGTAGATATACCAATTAAATATCTTGGTTTTTTCCTAGAGGATGATGCTGAGCTTGAGTACATAAGGACG
species | Vitis vinifera |
transcript | Vv12s0028g03370.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAAGATTCCATAGAGAACCACAGAAAATATGGAGCAAATCTTGAG GTAGATATACCAATTAAATATCTTGGTTTTTTCCTAGAGGATGATGCTGAGEST: gi|27581897|gb|CB004592.1|CB004592
genomic: CAAGATTCCATAGAGAACCACAGAAAATATGGAGCAAATCTTGAGgtactaattt ... cattgttcagGTAGATATACCAATTAAATATCTTGGTTTTTTCCTAGAGGATGATGCTGAG
EST: GTGGACAAGATTCCATAGAGAACCACAGAAAATATGGAGCAAATCTTGAG GTAGATATACCAATTAAATATCTTGGTTTTTTCCTAGAGGATGATGCTGAGEST: gi|27582130|gb|CB004825.1|CB004825
genomic: GTGGACAAGATTCCATAGAGAACCACAGAAAATATGGAGCAAATCTTGAGgtactaattt ... cattgttcagGTAGATATACCAATTAAATATCTTGGTTTTTTCCTAGAGGATGATGCTGAG
EST: GTGGACAAGATTCCATAGAGAACCACAGAAAATATGGAGCAAATCTTGAG GTAGATATACCAATTAAATATCTTGGTTTTTTCCTAGAGGATGATGCTGAG
genomic: GTGGACAAGATTCCATAGAGAACCACAGAAAATATGGAGCAAATCTTGAGgtactaattt ... cattgttcagGTAGATATACCAATTAAATATCTTGGTTTTTTCCTAGAGGATGATGCTGAG
atcctgaaggtaatttgatgatggcatgtactttgtttctttggacattgttcagGTAGATATACCAATTAAATATCTTGGTTTTTTCCTAGAGGATGATGCTGAGCTTGAGTACATAAGGACG
atttgat putative branch site (score: 5)
taatttgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttatgtttacatattttgatttaatggaaggccaaacaattatatatcctgaaggtaatttgatgatggcatgtactttgtttctttggacattgttcagGTAGATATACCAATTAAATATCTTGGTTTTTTCCTAGAGGATGATGCTGAGCTTGAGTACATAAGGACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - aatggaa
- - - - - - - - - - - - - - - -ccaaaca
- - - - - - - - - - - - - - - - - - - - - - - tcctgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tggcatg