Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgccttttacttctggtttttgttgccttttttgtatgacttgttcaacatttgtctattctaacttcagcctgatgtgattcctattcgatttgttattagATTGTCAGACCTCTTCGTGCAAAGCACTGTTCCACCTGTGATCGATGTGTCGAACAGTTTGACCATCATTGCCCTTGGGTGTCTAATTGCATTGGCAAG

Basic information

species Vitis vinifera
transcript Vv11s0118g00470.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os06g43680.1 (Oryza sativa), 3'ss of exon 9
gtgccttttacttctggtttttgttgccttttttgtatgacttgttcaacatttgtctattctaacttcagcctgatgtgattcctattcgatttgttattagATTGTCAGACCTCTTCGTGCAAAGCACTGTTCCACCTGTGATCGATGTGTCGAACAGTTTGACCATCATTGCCCTTGGGTGTCTAATTGCATTGGCAAG
                ||   |   || || |      || | |||     ||||     |  |  ||  | |   | ||||||| |   | ||  |    ||||||| |||||| ||||| | ||||| ||||| || |||||||| ||||| || |||||||||||||| || |||||||| ||||||||||||||||||
----------------gtaagtacagcattgtc-----gattagttttctctttgctaggttgatatttgggcc--tctgattccaag--ggttattctacagATTGTGAGACCTGTTCGTTCGAAGCATTGTTCTACATGTGATCGCTGTGTTGAGCAGTTTGACCATCACTGTCCTTGGGTATCTAATTGCATTGGCAAG

upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: LOC_Os02g09130.1 (Oryza sativa), 3'ss of exon 9
gtgccttttacttctggtttttgttgccttttttgtatgacttgttcaacatttgtctattctaacttcagcctgatgtgattcctattcgatttgttattagATTGTCAGACCTCTTCGTGCAAAGCACTGTTCCACCTGTGATCGATGTGTCGAACAGTTTGACCATCATTGCCCTTGGGTGTCTAATTGCATTGGCAAG
                ||   |  |  |  ||     ||| ||  || | || | |  | | | |||| |     |  |||||| | |      | | | |||||||| || ||| | ||  |||| || || || || || ||||| ||||| || || ||||||||||| |||||||||||||||||||||||||| |||
----------------gtgagttatttccattcaaagtgagtttctccatatat-ttaacttttacttaaa---aacctgattcatcta-----tatcaatagATTGTTAGGCCTGTACGCTCAAAACATTGCTCTACATGCGATCGCTGTGTTGAGCAATTTGACCATCACTGCCCTTGGGTGTCTAATTGCATTGGAAAG

upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G087806_T01 (Zea mays), 3'ss of exon 9
gtgccttttacttctggtttttgttgccttttttgtatgacttgttcaacatttgtct--attctaacttcagcctgatgtgattcctattcgatttgttattagATTGTCAGACCTCTTCGTGCAAAGCACTGTTCCACCTGTGATCGATGTGTCGAACAGTTTGACCATCATTGCCCTTGGGTGTCTAATTGCATTGGCAAG
                    |   |  |||  ||| |  | |   | | |  ||  ||  ||| | | |    |         ||||||    ||||||||  |||| ||||||||| ||||| |||| || ||||| || |||||||| || || || ||||||||||| || ||||||||||| ||||||||||| || |||
-------------------gtaagtcacttgattgaacaattcagttatctctttccttgattgttattctcacagatcagatttcctaacatatttgttac-agATAGTCAGACCTGTTCGTTCAAAACATTGTTCTACATGTGATCGCTGCGTGGAGCAGTTTGACCACCACTGCCCTTGGGTATCTAATTGCATAGGAAAG

upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GRMZM2G024437_T02 (Zea mays), 3'ss of exon 9
gtgccttttacttctggtttttgttgccttttttgtatgacttgttcaacatttgtctattctaacttcagcctgatgtgattcctattcgatttgttattagATTGTCAGACCTCTTCGTGCAAAGCACTGTTCCACCTGTGATCGATGTGTCGAACAGTTTGACCATCATTGCCCTTGGGTGTCTAATTGCATTGGCAAG
                    |   |  ||   |||    | ||  |   | ||  |  ||| | | ||             |||||||    ||  |||  |||| ||||||||| ||||| | || || ||||| || |||||||| || || || |||||||| || |||||||||||||| ||||||||||| || |||
-------------------gtaagtcactcgattgagcaatttaattctctttctttgattgttattttcatagatcagatttcctatcatcttcattac-agATAGTCAGACCTGTTCGTTCGAAACATTGTTCTACATGTGATCGTTGCGTGGAGCAGTTTGATCACCATTGCCCTTGGGTATCTAATTGCATAGGAAAG

upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G11600.1 (Glycine max), 3'ss of exon 9
------------------------gtgccttttacttctggttt--ttgttgccttttttgtatgacttgttcaacatttgtctattcta-acttcagcctgatgtg-----attcctat-tcgatttgttattagATTGTCAGACCTCTTCGTGCAAAGCACTGTTCCACCTGTGATCGATGTGTCGAACAGTTTGACCATCATTGCCCTTGGGTGTCTAATTGCATTGGCAAG
                           | | || ||       |  |   || |||   |  |    |||    |     |||| | ||   |||     || | ||     | |  ||| | |  || |  | |||||||||| |||||||| ||||| |||||||||||||||||||| ||||| ||||| ||||| || ||||| |||||||| || |||||||| ||||||
gttctttgctttcttttgattgtctgacttcttgctgtaaagctgatcaatgtcttgcatacacagattgca-gatgccggtctttcctttgctttgaattgttttgcacacaattttatgttgtcttttcttcagATTGTCAGGCCTCTTCGAGCAAAACACTGTTCCACCTGTGATCGTTGTGTGGAACAATTTGATCACCATTGTCCTTGGGTATCCAATTGCATCGGCAAG

upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA13G23230.1 (Glycine max), 3'ss of exon 10
------------------------gtgccttttacttctggttt--ttgttgccttttttgtatgacttgttca-----acatttgtctattctaacttcagcctgatgtgattcctattcgatttgttattagATTGTCAGACCTCTTCGTGCAAAGCACTGTTCCACCTGTGATCGATGTGTCGAACAGTTTGACCATCATTGCCCTTGGGTGTCTAATTGCATTGGCAAG
                           | | || ||       |  |   || |||   |  |     |   ||     |  ||| | |    | | ||    |  |     ||     | |  || |  |||||||||||| |||||||| ||||| |||||||| ||||||||||  ||||| ||||| ||||| || ||||| |||||||| || |||||||||||||||
gttctttgctttctgttgattgtctgacttcttgctgtaaagctgatcaatgtcttgcatacacagactacacatgcccatctttctttgcattgaattgtttcatacacagttttatgttgccttttctttagATTGTCAGGCCTCTTCGAGCAAAACACTGTTCTACCTGTGATCATTGTGTGGAACAATTTGATCACCATTGTCCTTGGGTATCCAATTGCATTGGCAAG

upper sequence: Vv11s0118g00470.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT5G20350.1 (Arabidopsis thaliana), 3'ss of exon 9
gtgcctttt--acttctggtttttgttgccttttttgtatgacttgttcaacatttgtctattcta-acttcagcctgatgtgattc-ctattcgatttgttatt-agATTGTCAGACCTCTTCGTGCAAAGCACTGTTCCACCTGTGATCGATGTGTCGAACAGTTTGACCATCATTGCCCTTGGGTGTCTAATTGCATTGGCAAG
|| |||  |  | ||| | ||| |||     ||      | ||    |    | |  || || ||| |  |   | || | || | | || |      | ||||| ||||| ||||||||||||| || ||||||||||||||||||||||| ||||| || || ||||| || ||||| |||||||| || |||||  |||| || 
gtacctgctcaaattccgttttatgtctttcttcaatcttaacaccatacttaatcatcgatgctacatatttacttgttttggtccactgtgtttcattttattcagATTATCAGACCTCTTCGAGCTAAGCACTGTTCCACCTGTGATCGTTGTGTAGAGCAATTTGATCACCATTGTCCTTGGGTATCAAATTGTGTTGGAAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

acatttgtctattctaacttcagcctgatgtgattcctattcgatttgttattagATTGTCAGACCTCTTCGTGCAAAGCACTGTTCCACCTGTGATCGATGTGTCGAACAGTTTGACCATCATTGCCCTTGGGTGTCTAATTGCATTGGCAAG
                                           atttgttatta  TA-rich tract