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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcaattctcgattctgttctcagaagaaatagtttttacattatgttcataactgaatttctgagtacctatcaaaaaaaaaaaaaagaataataataactgaatttctgagttttgactcttctgttatgtgattgttcatgttgcagATGGTGCTGGAGATCCAGATGAAG

Basic information

species Vitis vinifera
transcript Vv11s0065g00450.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|87584845|gb|DY473849.1|DY473849
EST:     AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAG                         ATGGTGCTGGAGATCCAGATGAAG
genomic: AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAGgtatcaattc ... catgttgcagATGGTGCTGGAGATCCAGATGAAG
EST: gi|110395278|gb|EC960936.1|EC960936
EST:     AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAG                         ATGGTGCTGGAGATCCAGATGAAG
genomic: AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAGgtatcaattc ... catgttgcagATGGTGCTGGAGATCCAGATGAAG
EST: gi|33405732|gb|CF211359.1|CF211359
EST:     AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAG                         ATGGTGCTGGAGATCCAGATGAAG
genomic: AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAGgtatcaattc ... catgttgcagATGGTGCTGGAGATCCAGATGAAG
EST: gi|110391622|gb|EC956610.1|EC956610
EST:     AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAG                         ATGGTGCTGGAGATCCAGATGAAG
genomic: AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAGgtatcaattc ... catgttgcagATGGTGCTGGAGATCCAGATGAAG
EST: gi|351028718|gb|FQ433148.1|FQ433148
EST:     AGTGAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAG                         ATGGTGCTGGAGATCCAGATGAAG
genomic: AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAGgtatcaattc ... catgttgcagATGGTGCTGGAGATCCAGATGAAG
EST: gi|22011495|gb|BQ796529.1|BQ796529
EST:     AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAG                         ATGGTGCTGGAGATCCAGATGAAG
genomic: AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAGgtatcaattc ... catgttgcagATGGTGCTGGAGATCCAGATGAAG
EST: gi|110377829|gb|EC942921.1|EC942921
EST:     AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAG                         ATGGTGCTGGAGATCCAGATGAAG
genomic: AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAGgtatcaattc ... catgttgcagATGGTGCTGGAGATCCAGATGAAG
EST: gi|161716363|gb|FC068095.1|FC068095
EST:     AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAG                         ATGGTGCTGGAGATCCAGATGAAG
genomic: AGTAAAATTGGCGGATCTGCAAAGAATTTTAAGTAACATTGAACCTGCAGgtatcaattc ... catgttgcagATGGTGCTGGAGATCCAGATGAAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aataactgaatttctgagttttgactcttctgttatgtgattgttcatgttgcagATGGTGCTGGAGATCCAGATGAAG
      tgaattt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtatcaattctcgattctgttctcagaagaaatagtttttacattatgttcataactgaatttctgagtacctatcaaaaaaaaaaaaaagaataataataactgaatttctgagttttgactcttctgttatgtgattgttcatgttgcagATGGTGCTGGAGATCCAGATGAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CAGATG