1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtaagttgcttttctgaatcatttcaatctgaatatgttcttgtaatgggggtggttatgacattttttgctaatttattttattttgttgtttattgaaaacaaatgtgaattctttaggcatgtatttactcttggcctctttgacctcagATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAACAGTGGAGGAGGCTGAAAGGTTGTTAGGTTTTTCACCAGATGTTTACTTT
species | Vitis vinifera |
transcript | Vv11s0052g00880.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTAC ATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAACEST: gi|71862920|gb|DT011975.1|DT011975
genomic: GATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgct ... ttgacctcagATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
EST: GATCGTTCTTGTACACATCTGGAATTCGACATATCTGGCACTGGACTTAC ATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAACEST: gi|71865093|gb|DT014148.1|DT014148
genomic: GATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgct ... ttgacctcagATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
EST: GATCGTTCTTGTACACATCTGGAATTCGACATATCTGGCACTGGACTTAC ATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAACEST: gi|30300181|gb|CB976975.1|CB976975
genomic: GATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgct ... ttgacctcagATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
EST: GTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTAC ATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAACEST: gi|71861275|gb|DT010330.1|DT010330
genomic: GTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgct ... ttgacctcagATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
EST: GATCGTTCTTGTACACATCTGGAATTCGACATATCTGGCACTGGACTTAC ATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
genomic: GATCGTTCTTGTACGCATCTGGAATTCGACATATCTGGCACTGGACTTACgtaagttgct ... ttgacctcagATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAAC
aaaacaaatgtgaattctttaggcatgtatttactcttggcctctttgacctcagATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAACAGTGGAGGAGGCTGAAAGGTTGTTAGGTTTTTCACCAGATGTTTACTTT
ctttgac putative branch site (score: 4)
ctcttggcctcttt CT-rich tract
aattcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagttgcttttctgaatcatttcaatctgaatatgttcttgtaatgggggtggttatgacattttttgctaatttattttattttgttgtttattgaaaacaaatgtgaattctttaggcatgtatttactcttggcctctttgacctcagATATGAAACAGGAGATCATGTTGGTGTGTACTGTGAGAATCTGCCTGAAACAGTGGAGGAGGCTGAAAGGTTGTTAGGTTTTTCACCAGATGTTTACTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG