Sequence
atgc intronic sequence ATGC exonic sequencegtaatgtttaacatccccttttctcttattggatattttaacatggtctgatctaaaatttgttcctctattttgttccttgatagCTTAAATATCACGATACCGGAAAAGAAAAAGAATATTTGCCGCAAGTTGGTCAATGGAATATGACAAACAAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA04G21450.1 (Glycine max), 3'ss of exon 10
---------------------gtaatgtttaacatccccttttctcttattggatattttaacatggtctgatctaaaatttgttcctctattttgttccttgatagCTTAAATATCACGATACCGGAAAAGAAAAAGAATATTTGCCGCAAGTTGGTCAATGGAATATGACAAACAAG
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gtaatttgatcataattaattaaattgtttacaaatgttgtttgctttagcagtttttccattatgattacat-tatattttggctct---tcttgtccct--aaagTTGAAATATCACGACACTGGAAGAGAGAAAGAATACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAG
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA06G23920.1 (Glycine max), 3'ss of exon 9
--------------------gtaatgtttaacatccccttttctcttattggatattttaacatggt-ctgatctaaaatttgttcctctattttgttccttgatagCTTAAATATCACGATACCGGAAAAGAAAAAGAATATTTGCCGCAAGTTGGTCAATGGAATATGACAAACAAG
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gtaatcatctcataattaattaaattgtttacaaatgttgtttgctt-ttgcac-ttttgccgttatgcttatattatattt-tggctct-tcttgtccctt--tagTTGAAATATCATGACACTGGAAGAGAGAAAGAATACTTGCCACAAGTTGGTCAGTGGAATATGATGAACAAG
upper sequence: Vv11s0016g04620.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G12850.1 (Glycine max), 3'ss of exon 9
gtaat-gtttaacatccccttttctcttattggata--ttttaacatggtc-tgatctaaaatttgt-tcctctattttgttccttgatagCTTAAATATCACGATACCGGAAAAGAAAAAGAATATTTGCCGCAAGTTGGTCAATGGAATATGACAAACAAG
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gtaattgtctttagttaaattggtcaatcatagatagcttttggcattctcctagtcctgattgtacattttggctcttctctcttcatagTTGAAATATCACGAGACTGGAAGGGAGAAAGAATACCTGCCACAAGTTGGTCAATGGAACATGATGAACAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gatattttaacatggtctgatctaaaatttgttcctctattttgttccttgatagCTTAAATATCACGATACCGGAAAAGAAAAAGAATATTTGCCGCAAGTTGGTCAATGGAATATGACAAACAAG
tttgttcctctatttt CT-rich tract
atctaaaatttgtt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatgtttaacatccccttttctcttattggatattttaacatggtctgatctaaaatttgttcctctattttgttccttgatagCTTAAATATCACGATACCGGAAAAGAAAAAGAATATTTGCCGCAAGTTGGTCAATGGAATATGACAAACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA