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gtccttgtctccctctttctttctattgcaaaacatgtatttattgcatctgacatacttgaattatatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACAATGCAACCAGTCACTGCTGTAAATAAGAGAGGCATCTTTTGCTGGACC
species | Vitis vinifera |
transcript | Vv11s0016g00830.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAG GGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACEST: gi|110374656|gb|EC939575.1|EC939575
genomic: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGgtccttgtct ... atatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
EST: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAG GGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACEST: gi|34543372|gb|CF511604.1|CF511604
genomic: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGgtccttgtct ... atatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
EST: CTTTCGATGTTACCCCAGCTGATCTGGTAGCTGGTACCATAACAGAGAAG GGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACEST: gi|30133085|gb|CB918424.1|CB918424
genomic: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGgtccttgtct ... atatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
EST: CTTTCGATGTTACCCCAGCTAATCTGATAGCTGGTATCATAACAGAGAAG GGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACEST: gi|110428947|gb|EC995431.1|EC995431
genomic: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGgtccttgtct ... atatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
EST: CTTCCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAG GGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACEST: gi|110409927|gb|EC975602.1|EC975602
genomic: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGgtccttgtct ... atatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
EST: CTTTCGATGTTACCCCAGCTAATCTGATAGCTGGTATCATAACAGAGAAG GGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACEST: gi|110395880|gb|EC961554.1|EC961554
genomic: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGgtccttgtct ... atatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
EST: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAG GGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACEST: gi|110363814|gb|EC927433.1|EC927433
genomic: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGgtccttgtct ... atatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
EST: CTTTCGATGTTACCCCAGCTAATCTGATAGCTGGTATCATAACAGAGAAG GGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACEST: gi|110391575|gb|EC956560.1|EC956560
genomic: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGgtccttgtct ... atatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
EST: CTTTCGATGTTACCCCAGCTAATCTGATAGCTGGTATCATAACAGAGAAG GGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACEST: gi|30252173|gb|CB969724.1|CB969724
genomic: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGgtccttgtct ... atatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
EST: CTTTCGATGTTACCCCAGTTAATCTGATAGCTGGTATCATAACAGAGAAG GGTGTAATTATTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACEST: gi|34543287|gb|CF511519.1|CF511519
genomic: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGgtccttgtct ... atatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
EST: CTTTCGATGTTACCCCAGCTGATCTGGTAGCTGGTACCATAACAGAGAAG GGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACEST: gi|110420049|gb|EC986310.1|EC986310
genomic: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGgtccttgtct ... atatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
EST: CTTTCGATGTTACCCCAGCTAATCTGATAGCTGGTATCATAACAGAGAAG GGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACEST: gi|110366059|gb|EC929706.1|EC929706
genomic: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGgtccttgtct ... atatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
EST: CTTTCGATGTTACCCCAGCTAATCTGATAGCTGGTATCATAACAGAGAAG GGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
genomic: CTTTCGATGTTACCCCAGCTGATCTGATAGCTGGTATCATAACAGAGAAGgtccttgtct ... atatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACAC
ttctattgcaaaacatgtatttattgcatctgacatacttgaattatatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACAATGCAACCAGTCACTGCTGTAAATAAGAGAGGCATCTTTTGCTGGACC
atctgac putative branch site (score: 3)
aaaacatgtatttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtccttgtctccctctttctttctattgcaaaacatgtatttattgcatctgacatacttgaattatatgatcagGGTGTAATTACTAAGACAGGTGATGTTTTCGACATCAAGGATTTCATACACAATGCAACCAGTCACTGCTGTAAATAAGAGAGGCATCTTTTGCTGGACC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA