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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtgtatttttttaaattagtcctttgtggataatctatggttctgagctagcttttttaaccatgctgattattaatgataccgacaatcactggcttttatgagaatacagtttctgtagtttgaaaaattttccttatctttattttttttaccatgcttagGTATGTTGAGAGCAATCCACAGTATGCAGAATCAAGTGTTTACTTGGTCAAGTTCAGACAACTCCAG

Basic information

species Vitis vinifera
transcript Vv11s0016g00350.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv11s0016g00350.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA17G04990.1 (Glycine max), 3'ss of exon 8
gtaagtgtatttttttaaattagtcctttgtggataatctatggttctgagctagcttttttaaccatgctgattattaatgataccgacaatcactggcttttatgagaatacagtttctgtagtttgaaaaattttccttatc-tttattttttttaccat---gcttagGTATGTTGAGAGCAATCCACAGTATGCAGAATCAAGTGTTTACTTGGTCAAGTTCAGACAACTCCAG
                      ||   |        |  |    |   |  ||   |   ||   |||||| | | |  |  ||  |   ||  | |     ||  |    ||     | ||||||| ||| |||     | ||| ||||  ||||||| | |     ||||||||||||| | ||||||||||||||||||||| |||||||||||| | || ||  | |||||||||
----------------------gtgagtaaaaatccagtttcattctagtacttcgtaactttgtcatgctcagtgtatagaatgtcacaaacgatttaacgtt--ggctttatctgctttgtagtt-gaacaataaatgtgatcatttacattttttatcttttaatttagGTATGTTGAAAACAATCCACAGTATGCAGAATCTAGTGTTTACTTGCTTAAATTTCGGCAACTCCAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|122689568|gb|EC941180.1|EC941180
EST:     GGCAATGAGAACTTTCTACCTCTGCTTAAACGGCTTGATGAGTGCATATC                         GTATGTTGAGAGCAATCCACAGTATGCAGAATCAAGTGTTTACTTGGTCAA
genomic: GGCAATGAGAACTTTCTACCTCTGCTTAAACGGCTTGATGAGTGCATATCgtaagtgtat ... ccatgcttagGTATGTTGAGAGCAATCCACAGTATGCAGAATCAAGTGTTTACTTGGTCAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cagtttctgtagtttgaaaaattttccttatctttattttttttaccatgcttagGTATGTTGAGAGCAATCCACAGTATGCAGAATCAAGTGTTTACTTGGTCAAGTTCAGACAACTCCAG
                     ttttccttatctttat  CT-rich tract
         tagtttgaaaaatttt  TA-rich tract