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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttccatatgcctgccgtgtcaatgtcgatgatcaaatcataatcatatatctgaaactgtcactgtgcgactaaactaaagtgtgaacttcaaaataaactgtagAGTGCAAATTCGAGCCAGAGCAACATGCTGATACTACAAGAGAGCTGCACTGATCCTACCGGCTCTTACGTGATCTACGCTCCAGTTGACATCGTTGCCA

Basic information

species Vitis vinifera
transcript Vv10s0116g00680.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA01G45070.1 (Glycine max), 3'ss of exon 9
gtaagttccatatgcctgccgtgtcaatgtcgatgatcaaatcataatcatatatctgaaactgt-cactgtgcgac-taaactaaagtgtgaacttcaaaataaact------------gtagAGTGCAAATTCGAGCCAGAGCAACATGCTGATACTACAAGAGAGCTGCACTGATCCTACCGGCTCTTACGTGATCTACGCTCCAGTTGACATCGTTGCCA
|||||||||   ||  | |    |   || |    ||  |   |||   |||||| |  |  | |  |   ||  || ||||    |   || | ||    | | ||             ||||||||||||||| ||||| ||||||||||||||||| |||||||| ||||| ||| | || ||||| || ||  | || ||||| || || || ||||| |
gtaagttcctgctgtgtacttaatttttggcatgcatgtatgtatatatatatatatatatatatatatcatgacacataaagctgaccctgtattttggtaaatacctaccttgtgtgcgtagAGTGCAAATTCAAGCCAAAGCAACATGCTGATACTTCAAGAGAGTTGCACAGATTCAACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTA

upper sequence: Vv10s0116g00680.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA11G00570.1 (Glycine max), 3'ss of exon 9
gtaagttccatatgcctgccgtgtcaatgtcgatgatcaaatcataatcatatatctgaaactgtcactgtgcgactaaactaaagtgtgaacttcaaaataaactgtagAGTGCAAATTCGAGCCAGAGCAACATGCTGATACTACAAGAGAGCTGCACTGATCCTACCGGCTCTTACGTGATCTACGCTCCAGTTGACATCGTTGCCA
         |  | |||||  | |  ||||   | || || |  |   |||| ||||        ||    | |   | | |   ||   ||| |          |||||||||||||||| ||||| ||||| ||||||||||| |||||||| ||||| ||| |||| ||||| || ||  | || ||||| || || || ||||| |
-------gtaagttcctgctatat--atgtatgtaattaa-ttgttggcataaatct--------catgacgggcacatatttg-gtaaaaaccttg--------tgtagAGTGCAAATTCAAGCCAAAGCAATATGCTGATACTTCAAGAGAGTTGCACAGATTCTACTGGCTCATATGTAGTTTATGCTCCTGTGGATATTGTTGCTA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgaaactgtcactgtgcgactaaactaaagtgtgaacttcaaaataaactgtagAGTGCAAATTCGAGCCAGAGCAACATGCTGATACTACAAGAGAGCTGCACTGATCCTACCGGCTCTTACGTGATCTACGCTCCAGTTGACATCGTTGCCA
                       aactaaa  putative branch site (score: 2)
                                   aacttcaaaataaa  TA-rich tract