Sequence
atgc intronic sequence ATGC exonic sequence...tttaacttggatatttctatgttttacaatcagctttttgcttctccttgaactgaataaatcagaattccaagttgaaatacattatttgttgatgtagGTTATGATGATTATATGTCATTCCTTTGTGGCATCAATGGGTCAGCTCCTATGGTTCTGAACTACACTGGTGAGATGTGTGGAGTTTCCACCATGAATGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G13590.1 (Glycine max), 3'ss of exon 10
----------------------------------------------------------------------------------------tttaacttggatatttctatgttttacaatcagctttttgcttc-tccttgaactgaataaatcagaattc-caagttgaaatacattatttgttgatgtagGTTATGATGATTATATGTCATTCCTTTGTGGCATCAATGGGTCAGCTCCTATGGTTCTGAACTACACTGGTGAGATGTGTGGAGTTTCCACCATGAATGG-
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gtaagtctcacttgacttaactaataaacttttaaatcattataatatccatgcaagtttcaaatgtttcaaaaattcagcaacgatgtctcacttaactagctcaaatttatgaaagcagctgcttgattaataaacaaacctgatt--tcagaattttcaagtgtgtttacac-atttttctttgtagGTTATGATGATTACATGTCATTCCTATGTGGTATCAACGGTTCAACTCCTACAGTGCTAAACTACACTGGTCAAAATTGCTGGACTTATAAT-TCAACACT
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G21920.1 (Glycine max), 3'ss of exon 9
tttaacttggatatttctatgttttacaatcagctttttgcttctccttgaactgaataaatcagaattccaagttgaaa---tacat-tatttgttgatgtagGTTATGATGATTATATGTCATTCCTTTGTGGCATCAATGGGTCAGCTCCTATGGTTCTGAACTACACTGGTGAGATGTGTGGAGTTTCCACCATGAATGG
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ctcatttttgaactacctctagtttgatgtaaactggatgattaat----gattaatgaagctggtttcttaatgtggaagtgtacatgtatgtttctttgtagGTTATGATGATTACATGTCATTTCTATGTGGTATTAATGGCTCAGCTCCTGTGGTGCTAAACTACACCGGTCAAAATTGCGGGCTTTATAATTCGACTGT
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G09850.1 (Glycine max), 3'ss of exon 10
tttaacttggatatttctatgttttacaatcagctttttgcttc-tccttgaactgaataaatcagaattccaagt-tgaaa----tacat-tatttgttgatgtagGTTATGATGATTATATGTCATTCCTTTGTGGCATCAATGGGTCAGCTCCTATGGTTCTGAACTACACTGGTGAGATGTGTGGAGTTTCCACCATGAATGG
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-----tttaactacgtcta-gttttatg-taaactggttgattaatgattgatgttagtagtcctggtttcttaatgtggaagtcttacatgcatgtttctttgtagGTTATGATGATTACATGTCATTTCTATGTGGAATCAACGGTTCAGCTCCCGTGGTGCTAAACTACACGGGCCAAAATTGCGCGCTCTATAACTTGACTGT
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA05G30460.1 (Glycine max), 3'ss of exon 10
---------------------------------------------------------------------------------tttaacttggatatttctatgttttacaatcagctttttgcttctccttga--actgaataaatcagaattccaagtt--gaaatacatt-------atttgttgatgtagGTTATGATGATTATATGTCATTCCTTTGTGGCATCAATGGGTCAGCTCCTATGGTTCTGAACTACACTGGTGAGATGTGTGGAGTTTCCACCATGAATGG-
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gtaagtctcaattgactaatgaactttcaaatcattataatttccatgcaagttcaaatgtttcaaaaattcagcaacgattgttgttcaaatgtctcacttatctagctcaaatttatgaaagctgcttgattaataaacaagcctgttttctgaattttcaaatgtgtttatacatatttttctttgtagGCTATGATGACTACATGTCATTCCTATGTGGTATCAATGGTTCAACTCCTACAGTGCTAAACTACACCGGTCAAAATTGCTGGACTTATAAT-TCAACACT
upper sequence: Vv10s0092g00170.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: AT4G20430.1 (Arabidopsis thaliana), 3'ss of exon 9
tttaacttggatatttctatgttttacaatcagctttttgcttctccttgaactgaataaatcagaattccaagttgaaatacattatttgttgatgtagGTTATGATGATTATATGTCATTCCTTTGTGGCATCAATGGGTCAGCTCCTATGGTTCTGAACTACACTGGT--GAGATGTGTGGAGTTTCCACCATGAATGG
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-gtgagttaaacactta-acataaccttggcagttttctacattttc---aaattaccaaatgtagacaccattttaacg------gtctttctatgcagGTTTTGAAGACTATATGTCATTTCTTTGTGGCATCAATGGATCAGCTCCAGTGGTATTCAACTACACCGGCACAAATTGCTTGCGGAACAATGCAACAAT--Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|71867497|gb|DT016552.1|DT016552EST: CTTTGTGAATGCAACTGCAGCATTAGACCCTGGTCTGATATTCGATGCAA GTTATGATGATTATATGTCATTCCTTTGTGGCATCAATGGGTCAGCTCCTA
genomic: CTTTGTGAATGCAACTGCAGCATTAGACCCTGGTCTGATATTCGATGCAAgtaagtattt ... gttgatgtagGTTATGATGATTATATGTCATTCCTTTGTGGCATCAATGGGTCAGCTCCTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ccttgaactgaataaatcagaattccaagttgaaatacattatttgttgatgtagGTTATGATGATTATATGTCATTCCTTTGTGGCATCAATGGGTCAGCTCCTATGGTTCTGAACTACACTGGTGAGATGTGTGGAGTTTCCACCATGAATGG
tgttgat putative branch site (score: 4)
ttgaaatacattattt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
tttaacttggatatttctatgttttacaatcagctttttgcttctccttgaactgaataaatcagaattccaagttgaaatacattatttgttgatgtagGTTATGATGATTATATGTCATTCCTTTGTGGCATCAATGGGTCAGCTCCTATGGTTCTGAACTACACTGGTGAGATGTGTGGAGTTTCCACCATGAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - -acaatca
- - - - - - - - - - - - - - - - - - - - - - - - - - - gaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gaaatac