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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaatatcggcacaaccttgtcatcatgacagctgtgggtcatatgtgtatatatatatattcaccttttctgaagtcttttttttttttgaactttgtttgatatgtttggttcagTGGTGAAGATGCATATAAAAAAATACGAGCAGGAGCAACTCTTGTTCAGCTTTATACACAGTTTGCTTATGAGGGTCCTGCCCTTATTCCTCAAATAAAG

Basic information

species Vitis vinifera
transcript Vv10s0042g00140.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0042g00140.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA10G43220.1 (Glycine max), 3'ss of exon 9
gtaaaa-tatcggcacaaccttgtcatcatga--cagctgtgggtcatatgtgtata-tatatatattcaccttttctgaagtcttttttttttttgaactttgtttgatatgttt-----ggttcagTGGTGAAGATGCATATAAAAAAATACGAGCAGGAGCAACTCTTGTTCAGCTTTATACACAGTTTGCTTATGAGGGTCCTGCCCTTATTCCTCAAATAAAG
|||||| ||   |  |   |      |||| |   |||||      |  | | || | | ||| | || |   ||| | ||   |   || |     || ||||| |||  | |||       || ||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| |||||    || ||||||| ||| ||||| ||||||||||| ||||||
gtaaaactacatgttccttcactcattcattagttagctgattactagttatctacagtgtatttttttatgatttttaaaaaatgaattatacaataa-tttgtctgacctttttatattaatttagTGGGGAAGATGCATATAAGAAAATACGAGCTGGAGCAACTCTAGTTCAGCTCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAG

upper sequence: Vv10s0042g00140.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA20G23670.1 (Glycine max), 3'ss of exon 9
gtaaaatatcggcacaaccttgtcatcatg-acagctgtgggtcatatgtgtatatatata-tattcacctt----ttctgaagtcttttttttttttgaactttgtttgatatgtt-----tggttcagTGGTGAAGATGCATATAAAAAAATACGAGCAGGAGCAACTCTTGTTCAGCTTTATACACAGTTTGCTTATGAGGGTCCTGCCCTTATTCCTCAAATAAAG
|||||| |    ||    | |    ||||  |    ||| | | ||   ||  ||| || | | |    |||    ||   ||  | |   || |       | ||||| |  | ||     |  || ||||| |||||||||||||| ||||||||||| ||||||||||| |||||||| |||||    || ||||||| ||| ||||| ||||||||||| ||||||
gtaaaa-actaacatgttccttcactcattcattagtgtagctgattactggttatctacagtgtatctcttatgatttaaaaaacatgaattatacaattatctgtttaagctttttatattaatttagTGGGGAAGATGCATATAAGAAAATACGAGCTGGAGCAACTCTAGTTCAGCTCTATACCGCATTCGCTTATGGGGGACCTGCACTTATTCCTCAGATAAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caccttttctgaagtcttttttttttttgaactttgtttgatatgtttggttcagTGGTGAAGATGCATATAAAAAAATACGAGCAGGAGCAACTCTTGTTCAGCTTTATACACAGTTTGCTTATGAGGGTCCTGCCCTTATTCCTCAAATAAAG
                                   gtttgat  putative branch site (score: 5)
                ttttttttttttgaac  TA-rich tract