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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgacttaattttttcttttcatgttgcttggaaatttgcgaacactttccatctaccaggctgttatttaataaatgtctctttgttttgtttgctttgatgcagTTTTATAGGAAGATTATTTCGTCATGCTTTGGAGGACTCACGGCCTAAATCTGTTTTAGTTAACTCTTTGTCTGTATGCATATCTTTATTAGACCCTAAG

Basic information

species Vitis vinifera
transcript Vv10s0003g04630.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g04630.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G13580.1 (Glycine max), 3'ss of exon 9
gtatgacttaattt---tttcttttcatgttgcttggaaatttgcgaacactttccatctaccaggctgttatttaataaatgtctctttg----ttttgtttgctttgatgcagTTTTATAGGAAGATTATTTCGTCATGCTTTGGAGGACTCACGGCCTAAATCTGTTTTAGTTAACTCTTTGTCTGTATGCATATCTTTATTAGACCCTAAG
||| || ||  |       | ||||  |  ||  || ||   | | | || ||| ||||        | ||||  |     |   |||||     ||||  |    |   ||||| |||||||||||||||||  |||||||| | || | ||| ||||| ||||||||| | ||||||||| | |||||||||||||||||  ||||||| |||
gta-gatttgttccaggactattttttttatgagtgcaatcctac-atcagttttcatcgcttgaagt-ttatgcatcctttccttctttaacattttttatcatctatttgcagCTTTATAGGAAGATTATTCTGTCATGCTCTTGAAGTCTCTCGGCCAAAATCTGTTCTCGTTAACTCTCTATCTGTATGCATATCTTTGCTAGACCCCAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atctaccaggctgttatttaataaatgtctctttgttttgtttgctttgatgcagTTTTATAGGAAGATTATTTCGTCATGCTTTGGAGGACTCACGGCCTAAATCTGTTTTAGTTAACTCTTTGTCTGTATGCATATCTTTATTAGACCCTAAG
                           tctctttgttttgttt  CT-rich tract
             ttatttaataaatgtc  TA-rich tract