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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacggcattactgatgttcatgacgtgatatttttctttcaatatttgatttttctttttttctttttttaattgatgatgctaacaaaagggaggttgttgaaatgtggtgcttggctgcttgcagATAAGAGTCGCTAACTTGAGTAGACTCTGCTTCAAAGGAACACACAGTTACTTATCTATTATAGGATTCTCACCGGCATTCTGGGTTTTGAAAACATTTT

Basic information

species Vitis vinifera
transcript Vv10s0003g03950.t01
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|110420546|gb|EC986821.1|EC986821
EST:     TCTCAAGGCTGCCCATTGCAAAGAATGTGGGCATCTATCGTAGGATCTAG                         ATAAGAGTCGCTAACTTGAGTAGACTCTGCTTCAAAGGAACACACAGTTAC
genomic: TCTCAAGGCTGCCCATTGCAAAGAATGTGGGCATCTATCGTAGGATCTAGgtacggcatt ... ctgcttgcagATAAGAGTCGCTAACTTGAGTAGACTCTGCTTCAAAGGAACACACAGTTAC
EST: gi|110722811|gb|EE099409.1|EE099409
EST:     TCTCAAGGCTGCCCATTGCAAAGAATGTGGGCATCTATCGTAGGATCTAG                         ATAAGAGTCGCTAACTTGAGTAGACTCTGCTTCAAAGGAACACACAGTTAC
genomic: TCTCAAGGCTGCCCATTGCAAAGAATGTGGGCATCTATCGTAGGATCTAGgtacggcatt ... ctgcttgcagATAAGAGTCGCTAACTTGAGTAGACTCTGCTTCAAAGGAACACACAGTTAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgatgatgctaacaaaagggaggttgttgaaatgtggtgcttggctgcttgcagATAAGAGTCGCTAACTTGAGTAGACTCTGCTTCAAAGGAACACACAGTTACTTATCTATTATAGGATTCTCACCGGCATTCTGGGTTTTGAAAACATTTT
       tgctaac  putative branch site (score: 1)
          taacaaaa  TA-rich tract