Sequence
atgc intronic sequence ATGC exonic sequencegtatgcttctctctctctttccccaccaccccaacctgcaacccctttgggtttggtctttgctgagttttcttttgttatggcttacacttgtttgttgtagATGATTGCATCGGAAGATATAGGGAGACAGATATTGACATATGGAGAGAG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: Vv10s0003g03230.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA08G21380.1 (Glycine max), 3'ss of exon 10
gtatgcttctctctctctttccccaccaccccaacctgcaacccctttgggtttggtctttgctgagttttcttttgttatggcttacacttgtttgtt-gtagATGATTGCATCGGAAGATATAGGGAGACAGATATTGACATATGGAGAGAG
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-tgtgattctttttttatctt---acatacttaaatgaaaagtgggtctggttagatttcatttggatctcattttcttaaaataatcatttttttttttgcagATGATTGCATCAGAAGATATAGGGAGGCAGATTTTGACTTATGGAGAAAG
upper sequence: Vv10s0003g03230.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA07G01720.1 (Glycine max), 3'ss of exon 10
--gtatgcttctctctctctttccccaccaccccaacctgcaacccctttgggtttggtctttgctgagttttcttttgttatggcttacacttgtttgttgtagATGATTGCATCGGAAGATATAGGGAGACAGATATTGACATATGGAGAGAG
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tagagtgttaggaggagtgtgttgccagcacttctctgctgaactctgtctggttagatttcatttggatctcattcttaaaataatcat-----ttttttgcagATGATTGCATCAGAAGATATAGGAAGGCAGATTTTGACTTATGGAGAAAG
upper sequence: Vv10s0003g03230.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G02390.1 (Glycine max), 3'ss of exon 10
gtatgcttctctctctctttccccac-caccccaacctgcaacccctttgggtttggtctttgctgagttttcttttgttatggcttacacttgtttgttgtagATGATTGCATCGGAAGATATAGGGAGACAGATATTGACATATGGAGAGAG
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--attatctattttggatttctctacacgctttgtcacgtgtagaaaggggaattgatttcatatagtttgtcatgtgtttaaaaacaaa-ttgctt-ttgcagATGATTGCATCAGAGGATATAGGAAGGCAGATATTGACTTATGGAGAAAG atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gggtttggtctttgctgagttttcttttgttatggcttacacttgtttgttgtagATGATTGCATCGGAAGATATAGGGAGACAGATATTGACATATGGAGAGAG
ggcttac putative branch site (score: 3)
cttgttt CT-rich tract
ttttcttttgttat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtatgcttctctctctctttccccaccaccccaacctgcaacccctttgggtttggtctttgctgagttttcttttgttatggcttacacttgtttgttgtagATGATTGCATCGGAAGATATAGGGAGACAGATATTGACATATGGAGAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA