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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgagcaacctttataatcgttgttatttgtgaattaacaactagatatttagtttattggaatcttaatcatgaaattatcttcttaatttgtcccattcaagGTACACCTCAAAGATGTTGCTAGCTGCTATTGATGAATATCACAGGGGTACTTATGATTTCCTTTATCTGCCGATTGACTTTAAG

Basic information

species Vitis vinifera
transcript Vv10s0003g02670.t01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: Vv10s0003g02670.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA09G11630.1 (Glycine max), 3'ss of exon 7
gtatgagcaacctttataatcg-ttgttatttgtgaattaacaactagatatttagtttattggaatcttaatcatgaaattatcttcttaatttgtcccattcaagGTACACCTCAAAGATGTTGCTAGCTGCTATTGATGAATATCACAGGGGTACTTATGATTTCCTTTATCTGCCGATTGACTTTAAG
              ||| ||    | |||  |||  |||||| | || || |||   |||||||| |||||   |  | |||||    |   ||| |  | | || | ||||||||||| |||||  ||||||| ||||||||| |||| |||||| |||||||||| || |||||||| ||||||||||||
-------------gtatgattaactcttaagtgtttattaacca-tatatgtttt-cttattggattcttagataatatattattaatt--gtttataacctgca-gATACACCTCAAAAATGTTATTAGCTGCCATTGATGAAAATCATAGGGGTGCTTATGATTTTCTCTATCTGCCAATTGACTTTAAG

upper sequence: Vv10s0003g02670.t01 (Vitis vinifera), 3'ss of exon 9
lower sequence: GLYMA15G23420.1 (Glycine max), 3'ss of exon 9
gtatgagcaacctttataatcg-ttgttatttgtgaattaacaactagatatttagtttattggaatcttaatcatgaaattatcttcttaatttgtcccattcaagGTACACCTCAAAGATGTTGCTAGCTGCTATTGATGAATATCACAGGGGTACTTATGATTTCCTTTATCTGCCGATTGACTTTAAG
              ||| ||    | | |  |||  |||||| | ||||| |||   |||||||| |||||   |  | |||   |  |||   | | |      || |||||||| || |||||  ||||||| ||||||||| |||||||||||||||||||||| || ||  |||| ||||||||||||
-------------gtatgattaactctaaagtgttcattaacca-tagattttt--cttattggattcttagataacatattgattgtttataatctgc------agATACACCTCTAAAATGTTATTAGCTGCCATTGATGAAAATCACAGGGGTACTTATGATTTTCTCTACTTGCCAATTGACTTTAAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttagtttattggaatcttaatcatgaaattatcttcttaatttgtcccattcaagGTACACCTCAAAGATGTTGCTAGCTGCTATTGATGAATATCACAGGGGTACTTATGATTTCCTTTATCTGCCGATTGACTTTAAG
                                  tcttaat  putative branch site (score: 3)
                                        tttgtccc  CT-rich tract
                ttaatcatgaaattat  TA-rich tract