1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agaacacagctttcatgtcaaaatgaatgtttgttatttgtgatatgaaaggtacagtttaattgttcattgctctttaaacttcatatctattgcttagGTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGGTTTCCATCAGAGTACGTGGCAAAACGTCAAAGGCTTCCCACCAGTAATG
species | Vitis vinifera |
transcript | Vv10s0003g02590.t01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAG GTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGGEST: gi|110732518|gb|EE107876.1|EE107876
genomic: CAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAGgttatttcac ... tattgcttagGTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGG
EST: CAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAG GTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGGEST: gi|349832459|gb|FQ421020.1|FQ421020
genomic: CAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAGgttatttcac ... tattgcttagGTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGG
EST: CAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAG GTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGGEST: gi|56688232|gb|CX126135.1|CX126135
genomic: CAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAGgttatttcac ... tattgcttagGTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGG
EST: CAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAG GTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGGEST: gi|110699183|gb|EE075958.1|EE075958
genomic: CAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAGgttatttcac ... tattgcttagGTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGG
EST: CAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAG GTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGGEST: gi|56688352|gb|CX126255.1|CX126255
genomic: CAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAGgttatttcac ... tattgcttagGTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGG
EST: CAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAG GTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGG
genomic: CAGAGAAGGAACTGAGCCTGAATGTGGGAGACTATGTCGTTGTCCGGAAGgttatttcac ... tattgcttagGTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGG
tgaaaggtacagtttaattgttcattgctctttaaacttcatatctattgcttagGTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGGTTTCCATCAGAGTACGTGGCAAAACGTCAAAGGCTTCCCACCAGTAATG
gtttaat putative branch site (score: 4)
tttaattgttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agaacacagctttcatgtcaaaatgaatgtttgttatttgtgatatgaaaggtacagtttaattgttcattgctctttaaacttcatatctattgcttagGTGAGCCATACAGGATGGTCAGAAGGAGAATGCAAAGGTAAAGCAGGCTGGTTTCCATCAGAGTACGTGGCAAAACGTCAAAGGCTTCCCACCAGTAATG
-gaacaca
- - - - - - tcatgtc
- - - - - - - - - - aaatgaa
- - - - - - - - - - - - - - - - - - - - - - - -aaaggta